Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00190-2
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    62   3e-11
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   0.68 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   1.2  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   1.6  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   2.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   2.7  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    24   6.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   8.3  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 61.7 bits (143), Expect = 3e-11
 Identities = 31/78 (39%), Positives = 45/78 (57%)
 Frame = +3

Query: 129 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGARKQKLR*RAQSACQPRXXXXXXXX 308
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N A+ ++LR +       +        
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 309 XXXXXXQRPGDRFQMRIH 362
                  +  + ++MRIH
Sbjct: 68  TPNGEGSKTWETYEMRIH 85


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 0.68
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 102 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 200
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 111  VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGARKQK 248
            +S   IEKP+A  SPIH       +  +R L+ V      GAR+ +
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENR 932


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 83  IPAEINNFSIKNCSALNRRNLTFQLVS 3
           + +E+N+  IKN S LN RNL  ++++
Sbjct: 592 LESELNSSKIKNESLLNERNLLKEMLA 618


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 242 FPGSID*VSTDLLE*AHIARSKSDPDAVNR 153
           FPG +     + L+  H +RSKS P+ VN+
Sbjct: 137 FPGGLSTDIQEKLKAFHASRSKSMPEVVNK 166


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 131 ETPGRGLPYSP 163
           ETPGR LP+SP
Sbjct: 166 ETPGRNLPFSP 176


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = -2

Query: 144 LPGVSQCLCLTLQRLPCCLLN---SGR---DKQLFNQKLFSAEPEKPHV 16
           LP   +C+ LT ++LP        SGR   D  + N    S  P+  HV
Sbjct: 489 LPETFECISLTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHV 537


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 140 GRGLPYSPHQDHS 178
           G GL YSPHQ  S
Sbjct: 701 GEGLSYSPHQQFS 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,785
Number of Sequences: 5004
Number of extensions: 27821
Number of successful extensions: 68
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)