Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00190-2
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 59 9e-10
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 58 2e-09
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 58 2e-09
08_02_0535 + 18298244-18298486,18299937-18300353,18300680-183007... 28 2.6
12_01_0936 - 9285923-9286086,9286343-9286546,9287987-9288143 27 6.0
07_01_0814 - 6464072-6464544,6464770-6465208 27 6.0
05_07_0351 + 29468247-29469851 27 6.0
05_05_0026 + 21645845-21647404 27 6.0
06_03_1026 - 26994395-26994748 26 7.9
06_03_1021 - 26945479-26945825,26946365-26946704 26 7.9
06_03_1019 - 26940340-26940693 26 7.9
06_03_1018 - 26933599-26933952 26 7.9
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 26 7.9
02_01_0686 + 5112712-5112942 26 7.9
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 59.3 bits (137), Expect = 9e-10
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 233 SQETEAALKGPVRMPTKILRITTRKTPCGEGSKTWGSF 346
+++ +KGPVRMPTK+L ITTRK+PCGEG+ TW F
Sbjct: 52 AKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRF 89
Score = 54.0 bits (124), Expect = 3e-08
Identities = 31/88 (35%), Positives = 46/88 (52%)
Frame = +3
Query: 99 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGARKQKLR*RAQSACQ 278
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GA+ + L+ +
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 279 PRXXXXXXXXXXXXXXQRPGDRFQMRIH 362
+ DRF+MR+H
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVH 94
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 58.4 bits (135), Expect = 2e-09
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = +2
Query: 233 SQETEAALKGPVRMPTKILRITTRKTPCGEGSKTWGSF 346
+++ + +KGPVR+PTK+L ITTRK+PCGEG+ TW F
Sbjct: 54 AKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRF 91
Score = 58.0 bits (134), Expect = 2e-09
Identities = 30/88 (34%), Positives = 46/88 (52%)
Frame = +3
Query: 99 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGARKQKLR*RAQSACQ 278
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GA+ ++LR +
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 279 PRXXXXXXXXXXXXXXQRPGDRFQMRIH 362
+ DRF+ RIH
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIH 96
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 58.4 bits (135), Expect = 2e-09
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = +2
Query: 233 SQETEAALKGPVRMPTKILRITTRKTPCGEGSKTWGSF 346
+++ + +KGPVR+PTK+L ITTRK+PCGEG+ TW F
Sbjct: 51 AKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRF 88
Score = 57.2 bits (132), Expect = 4e-09
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +3
Query: 96 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGARKQKLR*RA 263
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GA+ ++LR +
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 264 QSACQPRXXXXXXXXXXXXXXQRPGDRFQMRIH 362
+ DRF+ RIH
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIH 93
>08_02_0535 +
18298244-18298486,18299937-18300353,18300680-18300757,
18300893-18301045,18301131-18301239,18301321-18301487,
18301571-18301954
Length = 516
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 287 LRITTRKTPCGEGSKTWGSFSDANP 361
+++ +RK C EG +W SD NP
Sbjct: 425 IKVLSRKVTCKEGFSSWLPTSDPNP 449
>12_01_0936 - 9285923-9286086,9286343-9286546,9287987-9288143
Length = 174
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 28 LRFSAEQFLIEKLFISAGIQQATWQPL*CQAKTLRNPRQR 147
+R + E I ++SA A + P CQ KTL P++R
Sbjct: 3 IRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLLPPKER 42
>07_01_0814 - 6464072-6464544,6464770-6465208
Length = 303
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 236 QETEAALKGPVRMPTKILRITTRKTPC 316
Q+ A LKG PT LR+T RK C
Sbjct: 217 QKELAELKGETPPPTPKLRLTARKRTC 243
>05_07_0351 + 29468247-29469851
Length = 534
Score = 26.6 bits (56), Expect = 6.0
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 362 VDSHLKTIPRSLNLHHKEFYGW*YAGSWLACGLGPLTQLLFPG-SID*VSTDLLE*AHIA 186
+DSHL +P++ + Y W +AG G+ P + P SI+ L A A
Sbjct: 398 LDSHLAHLPKAEIKGFEYCYNWTFAGD----GVDPAHNVTIPSFSIEMAGDARL--AADA 451
Query: 185 RSKSDPDAVNRGDLCLGF 132
+S P+ V G +CLGF
Sbjct: 452 KSIVVPEVV-PGVVCLGF 468
>05_05_0026 + 21645845-21647404
Length = 519
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 244 CFLAPLIRSAQTFSSERTL 188
C L PL+RSA ++ SER L
Sbjct: 171 CRLIPLLRSASSYGSERLL 189
>06_03_1026 - 26994395-26994748
Length = 117
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 224 NQWSQETEAALKGP 265
N WS ++EAALKGP
Sbjct: 69 NTWSLKSEAALKGP 82
>06_03_1021 - 26945479-26945825,26946365-26946704
Length = 228
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 224 NQWSQETEAALKGP 265
N WS ++EAALKGP
Sbjct: 69 NTWSLKSEAALKGP 82
>06_03_1019 - 26940340-26940693
Length = 117
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 224 NQWSQETEAALKGP 265
N WS ++EAALKGP
Sbjct: 69 NTWSLKSEAALKGP 82
>06_03_1018 - 26933599-26933952
Length = 117
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 224 NQWSQETEAALKGP 265
N WS ++EAALKGP
Sbjct: 69 NTWSLKSEAALKGP 82
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 191 CALTREGLC*PNQWSQETEAALKGPVRMPTKILRIT 298
C L EGL ++W++ A +GP + + R T
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSPLKQPLTRTT 190
>02_01_0686 + 5112712-5112942
Length = 76
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 67 FISAGIQQA-TWQPL*CQAKTLRNPRQRSPLFTASGSLLLLAMCAHSRR 210
FI A + + W+ + K RN R+R LF L LA A RR
Sbjct: 6 FIGAALIEVWRWEERMVEKKRTRNTRERGGLFPRKLQLRALAAIARFRR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,255,024
Number of Sequences: 37544
Number of extensions: 206715
Number of successful extensions: 564
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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