Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00190-2
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   1e-11
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   0.65 
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   2.6  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    27   6.0  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.0  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               26   8.0  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = +2

Query: 233 SQETEAALKGPVRMPTKILRITTRKTPCGEGSKTWGSF 346
           ++E +  +KGPVRMPTK LRITTRKTPCGEGSKTW  +
Sbjct: 24  AKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRY 61



 Score = 34.3 bits (75), Expect = 0.030
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 186 RNVRSLEKV--CADLINGARKQKLR*RAQSACQPRXXXXXXXXXXXXXXQRPGDRFQMRI 359
           + VR+  KV  CADLI GA+++KL+ +       +               +  DR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 360 H 362
           H
Sbjct: 66  H 66


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 120 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 221
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 259  GPSPHANQDPAYHHP 303
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 87  TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 209
           T N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 51   FD*KVVYLGRNSTSNMAAAVVSGKD-IEKPQAEVSPIHRIRITLTSRNVRSLEK 209
            FD K VYL RN+T+   AA+ S K+ I + QA +S +      + +R + +L K
Sbjct: 1396 FD-KKVYLLRNATTKAEAAIKSQKEQISRLQARLSAMEEANENV-NRKLDTLNK 1447


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 78   RNSTSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLING 233
            ++STSN   +   G     PQ E     +I  T+ SR+   +EK  +    G
Sbjct: 2668 QSSTSNFKKSTSMGNLNRNPQEESRAKRKISDTVVSRSAAIVEKTSSGFYKG 2719


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 75  GRNSTSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVR 197
           G  S SN  +   +  D+E PQ  ++ +  + I + S+N++
Sbjct: 54  GSGSGSNSGSGSGAAADLEDPQTPLTHLRPLEILVPSKNLK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,648,782
Number of Sequences: 59808
Number of extensions: 241865
Number of successful extensions: 502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)