Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00190-2
         (364 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   3.5  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    22   6.2  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    22   8.1  

>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 335 RSLNLHHKEFYGW*YAGSWLACGLGPLTQLL 243
           RSLN+    F G  ++  W    + PL++ L
Sbjct: 659 RSLNIRRGIFQGDTFSTLWFCLAMNPLSRTL 689



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 335 RSLNLHHKEFYGW 297
           R  N++ +EFY W
Sbjct: 389 RMFNINEREFYNW 401


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 131 ETPGRGLPYSPHQDHSYFSQCALTR 205
           E PG  +P  PH   SY S   + +
Sbjct: 360 EMPGMSVPPQPHTHPSYGSPAEIPK 384


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 120 KDIEKPQAEVSPIHRIRITLTSRNVRSLEK 209
           KD+EKP+ E     +   TLT    + ++K
Sbjct: 284 KDLEKPKTEAVEYLKQENTLTRTRNQQIQK 313


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 389,323
Number of Sequences: 2352
Number of extensions: 8804
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 27084645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)