Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00190-2
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...    65   1e-11
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    27   3.0  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   4.0  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   4.0  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   4.0  
Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +2

Query: 254 LKGPVRMPTKILRITTRKTPCGEGSKTWGSF 346
           +KGP+RMPTK+LRITTRKTPCGEGSKTW  F
Sbjct: 49  VKGPIRMPTKVLRITTRKTPCGEGSKTWDRF 79



 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 29/68 (42%), Positives = 38/68 (55%)
 Frame = +3

Query: 159 HRIRITLTSRNVRSLEKVCADLINGARKQKLR*RAQSACQPRXXXXXXXXXXXXXXQRPG 338
           HRIR+TLTS+NV+ LEKVCA LI+GA+ + L  +       +               +  
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 339 DRFQMRIH 362
           DRFQMRIH
Sbjct: 77  DRFQMRIH 84


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 66  QLFNQKLFSAEPEKPHVSASLE 1
           +LFN+K  S  P KP V+AS+E
Sbjct: 48  ELFNEKAASFNPTKPVVAASVE 69


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 132  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGARK 242
            + +A+ SP HRI   +TS+N       C+ L+  A +
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 199 ERTL-REVRVILMR*IGETSAWGFSMSLPDTTA 104
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 96  MAAAVVSGKDIEKPQAEVSPIH 161
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 96  MAAAVVSGKDIEKPQAEVSPIH 161
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical
           protein LLC1.2 protein.
          Length = 272

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 130 RNPRQRSPLFTASGSLLLLAMCAHSRRSVL 219
           RNP Q + + T   SL    +C H  R  L
Sbjct: 68  RNPGQTADMLTVCNSLETFNLCMHGNRGCL 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,473,915
Number of Sequences: 27780
Number of extensions: 168125
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)