Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00190-2
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   4.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   7.8  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 114 TLQRLPCCLLNSGRD 70
           TL R PC LLN   D
Sbjct: 22  TLGRFPCLLLNGKXD 36


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 259 GPSPHANQDPAYHH 300
           G SPH +Q P+ +H
Sbjct: 626 GSSPHFHQSPSQNH 639


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 314 CGEGSKTWGSFSDANPQ 364
           CG    T+GS ++A PQ
Sbjct: 47  CGRRPSTFGSSNEALPQ 63


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 314 CGEGSKTWGSFSDANPQ 364
           CG    T+GS ++A PQ
Sbjct: 47  CGRRPSTFGSSNEALPQ 63


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 68  LSRPEFNKQHGSRCSVRQRH*ETPGRG 148
           ++  EFN ++  +C+ ++   E  GRG
Sbjct: 55  INESEFNDENYWQCNDKKTDIEETGRG 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,016
Number of Sequences: 438
Number of extensions: 2007
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)