Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00190-2
(364 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 60 6e-10
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 60 6e-10
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 60 6e-10
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 60 6e-10
At3g60200.1 68416.m06726 expressed protein hypothetical proteins... 27 2.8
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 4.9
At4g36260.1 68417.m05157 zinc finger protein-related similar to ... 27 4.9
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 27 4.9
At1g24470.1 68414.m03082 short-chain dehydrogenase/reductase (SD... 27 4.9
At1g12170.1 68414.m01409 F-box family protein contains F-box dom... 27 4.9
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r... 26 6.5
At3g07130.1 68416.m00849 serine/threonine protein phosphatase fa... 26 6.5
At3g61030.1 68416.m06828 C2 domain-containing protein similar to... 26 8.6
At3g60950.1 68416.m06819 C2 domain-containing protein similar to... 26 8.6
At3g22400.1 68416.m02826 lipoxygenase, putative similar to lipox... 26 8.6
At1g80330.1 68414.m09404 gibberellin 3-beta-dioxygenase, putativ... 26 8.6
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 59.7 bits (138), Expect = 6e-10
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 233 SQETEAALKGPVRMPTKILRITTRKTPCGEGSKTWGSF 346
+++ +KGPVRMPTK+L+ITTRK PCGEG+ TW F
Sbjct: 48 AKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRF 85
Score = 56.8 bits (131), Expect = 4e-09
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +3
Query: 156 IHRIRITLTSRNVRSLEKVCADLINGARKQKLR*RAQSACQPRXXXXXXXXXXXXXXQRP 335
IH+IRITL+S+NV++LEKVC DL+ GA+ ++LR + +
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 336 GDRFQMRIH 362
DRF++R+H
Sbjct: 82 WDRFELRVH 90
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 59.7 bits (138), Expect = 6e-10
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 233 SQETEAALKGPVRMPTKILRITTRKTPCGEGSKTWGSF 346
+++ +KGPVRMPTK+L+ITTRK PCGEG+ TW F
Sbjct: 46 AKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRF 83
Score = 58.8 bits (136), Expect = 1e-09
Identities = 27/75 (36%), Positives = 43/75 (57%)
Frame = +3
Query: 138 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGARKQKLR*RAQSACQPRXXXXXXXXXXX 317
+A + IH+IRITL+S+NV++LEKVC DL+ GA+ ++LR + +
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 318 XXXQRPGDRFQMRIH 362
DRF++R+H
Sbjct: 74 GEGTNTWDRFELRVH 88
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 59.7 bits (138), Expect = 6e-10
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 233 SQETEAALKGPVRMPTKILRITTRKTPCGEGSKTWGSF 346
+++ +KGPVRMPTK+L+ITTRK PCGEG+ TW F
Sbjct: 46 AKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRF 83
Score = 58.8 bits (136), Expect = 1e-09
Identities = 27/75 (36%), Positives = 43/75 (57%)
Frame = +3
Query: 138 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGARKQKLR*RAQSACQPRXXXXXXXXXXX 317
+A + IH+IRITL+S+NV++LEKVC DL+ GA+ ++LR + +
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 318 XXXQRPGDRFQMRIH 362
DRF++R+H
Sbjct: 74 GEGTNTWDRFELRVH 88
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 59.7 bits (138), Expect = 6e-10
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 233 SQETEAALKGPVRMPTKILRITTRKTPCGEGSKTWGSF 346
+++ +KGPVRMPTK+L+ITTRK PCGEG+ TW F
Sbjct: 48 AKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRF 85
Score = 56.8 bits (131), Expect = 4e-09
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +3
Query: 156 IHRIRITLTSRNVRSLEKVCADLINGARKQKLR*RAQSACQPRXXXXXXXXXXXXXXQRP 335
IH+IRITL+S+NV++LEKVC DL+ GA+ ++LR + +
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 336 GDRFQMRIH 362
DRF++R+H
Sbjct: 82 WDRFELRVH 90
>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
Length = 305
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 153 GRPLPGVSQCLCLTLQRLPCCLLNSGR--DKQLFNQKLFSAEPEKPHVSAS 7
G+ + G++ CL ++ P C + N +A PEKPH+SA+
Sbjct: 234 GKSMSGMAFCLSPLVRASPNCPFKRKMRFPSEFGNSGEVTAVPEKPHISAA 284
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 191 IARSKSDPDAVNRGDLCL 138
+A +K DPD+V RG +CL
Sbjct: 698 MAVTKLDPDSVRRGSICL 715
>At4g36260.1 68417.m05157 zinc finger protein-related similar to
lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702), TIGR01624: LRP1 C-terminal
domain, TIGR01623: putative zinc finger domain, LRP1
type
Length = 322
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +3
Query: 129 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGARKQKLR*RAQSACQPR 284
++ ++ P H+I ++ + + RS+ C D N A+K R ++ C+ R
Sbjct: 66 QQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQAKKDCTHMRCRTCCKSR 117
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 70 ISAGIQQATWQPL*CQAKTLRNPRQRSPLFTASGSLLLLAMCAHSRRS 213
+SAG ++ T P+ AKT P SP S LL L++ A S S
Sbjct: 406 LSAGKKKTTSSPVSSSAKTTSTPVSSSP--DTSSFLLSLSLAADSSSS 451
>At1g24470.1 68414.m03082 short-chain dehydrogenase/reductase (SDR)
family protein similar to b-keto acyl reductase
GI:2586127 from [Hordeum vulgare]
Length = 312
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 354 ASENDPQVFEPSPQGXXXXXXXXXXVGMRTGPFNAASVSW 235
A+ + P +F PSP+ +G R PF A S+ W
Sbjct: 247 AAIDKPSLFVPSPEVYAKAAVAQIGIGSRCSPFWAHSLQW 286
>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 149 LPYSPHQDHSYFSQCALTREGLC*PNQWSQETEAALKGPVRMPTKILRITTRKT 310
+PY + +YF+ C +GL + WS +AA+ P TK + + KT
Sbjct: 84 IPYLNNFMRTYFTPC----DGLLFCDSWSWRKKAAIWNPWLRQTKWIEYSKEKT 133
>At3g54430.1 68416.m06021 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 183
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 204 EKVCADLINGARKQKLR*RAQSACQPR 284
EKVC D N A+K+ L R ++ C+ R
Sbjct: 38 EKVCRDCGNRAKKECLFERCRTCCKSR 64
>At3g07130.1 68416.m00849 serine/threonine protein phosphatase
family protein contains similarity to purple acid
phosphatase [Arabidopsis thaliana]
gi|20257489|gb|AAM15914
Length = 532
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 247 FCFLAPLIRSAQTFSSERTLREVRVILMR*IGETSAWGFSMSLPDT 110
FCFL+P I SA + S V V + +TS G ++ LPDT
Sbjct: 9 FCFLSPAISSAHSIPSTLDGPFVPVTVPL---DTSLRGQAIDLPDT 51
>At3g61030.1 68416.m06828 C2 domain-containing protein similar to
CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 592
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 78 RNSTSNMAAAVVSGKDIEKPQAEVSPIHRIR 170
+++ N+ A VVS KDI K + P+ R+R
Sbjct: 468 QSTEKNLKAKVVSSKDISKEWKNIKPL-RVR 497
>At3g60950.1 68416.m06819 C2 domain-containing protein similar to
CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 592
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 78 RNSTSNMAAAVVSGKDIEKPQAEVSPIHRIR 170
+++ N+ A VVS KDI K + P+ R+R
Sbjct: 468 QSTEKNLKAKVVSSKDISKEWKNIKPL-RVR 497
>At3g22400.1 68416.m02826 lipoxygenase, putative similar to
lipoxygenase gi:8649004 [Prunus dulcis], gi:1495802 and
gi:1495804 from [Solanum tuberosum]
Length = 886
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 35 SALNNF*LKSCLSRPEFNKQHGSRCSVRQRH*ETPGRGL 151
S L F KSCL ++ QH S+R H E+ GL
Sbjct: 402 SRLQEFPPKSCLDSAKYGNQHS---SIRTEHIESNMNGL 437
>At1g80330.1 68414.m09404 gibberellin 3-beta-dioxygenase, putative /
gibberellin 3 beta-hydroxylase, putative similar to
gibberellin 3 beta-hydroxylase GA4H GB:AAC83647
[Arabidopsis thaliana], GA4 [GI:2160454]
Length = 355
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 308 TPCGEGSKTWGSFSDAN 358
T G+ SKTWG+F AN
Sbjct: 61 TLIGDASKTWGAFQIAN 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,058,782
Number of Sequences: 28952
Number of extensions: 158086
Number of successful extensions: 326
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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