Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00189X
(548 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.67
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.67
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.67
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 23 1.5
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 23 1.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 4.7
AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synth... 22 4.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.2
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.67
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 548 LSSDTVSRFYLKSTYTAVSSVLYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 390
L S TV + T VS + L G+Y ++F +V L +V + HHR
Sbjct: 233 LLSLTVFLNLVAETLPQVSDAIPLL-GSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.67
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 548 LSSDTVSRFYLKSTYTAVSSVLYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 390
L S TV + T VS + L G+Y ++F +V L +V + HHR
Sbjct: 233 LLSLTVFLNLVAETLPQVSDAIPLL-GSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.67
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 548 LSSDTVSRFYLKSTYTAVSSVLYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 390
L S TV + T VS + L G+Y ++F +V L +V + HHR
Sbjct: 233 LLSLTVFLNLVAETLPQVSDAIPLL-GSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 476 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 390
L G+Y ++F +V L +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 476 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 390
L G+Y ++F +V L +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 476 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 390
L G+Y ++F +V L +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 23.4 bits (48), Expect = 1.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 318 DEHGKIHRLRRECTGE 365
DE+ +I RL+R C+G+
Sbjct: 48 DEYDEIGRLKRTCSGD 63
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 23.4 bits (48), Expect = 1.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 318 DEHGKIHRLRRECTGE 365
DE+ +I RL+R C+G+
Sbjct: 48 DEYDEIGRLKRTCSGD 63
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -1
Query: 548 LSSDTVSRFYLKSTYTAVSSVLYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 390
L S TV + T VS + L G+Y ++F +V L +V HHR
Sbjct: 301 LLSLTVFLNLVAETLPQVSDAIPLL-GSYFNCIMFMVASSVVLTVLVLNFHHR 352
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 4.7
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 548 LSSDTVSRFYLKSTYTAVSSVLYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHT 378
L S TV + T A S + L GTY ++F +V ++ HHR+ T
Sbjct: 270 LLSLTVFLNMVAETMPATSDAVPLL-GTYFNCIMFMVASSVVSTILILNYHHRNADT 325
>AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synthase
16 kDa proteolipidsubunit protein.
Length = 156
Score = 21.8 bits (44), Expect = 4.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 199 GGGWIPSGYCSPRGYVHLPA 140
GG P GY +G+VHL A
Sbjct: 77 GGLEEPKGYTLFKGFVHLGA 96
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 476 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 390
L G+Y ++F +V L +V HHR
Sbjct: 324 LIGSYFNCIMFMVASSVVLTVLVLNFHHR 352
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,875
Number of Sequences: 438
Number of extensions: 3164
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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