Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00188
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 111 1e-25
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 108 1e-24
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 1.7
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 4.0
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 7.0
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 9.3
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 9.3
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 111 bits (266), Expect = 1e-25
Identities = 51/84 (60%), Positives = 65/84 (77%)
Frame = +1
Query: 1 KGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 180
KG+KK++VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADL
Sbjct: 14 KGIKKRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADL 73
Query: 181 QADTDAERSFRKFRLIAEYVQGRN 252
Q D E SFRK +L E +QG++
Sbjct: 74 Q--KDEEHSFRKVKLRVEDIQGKS 95
Score = 97.5 bits (232), Expect = 2e-21
Identities = 42/77 (54%), Positives = 60/77 (77%)
Frame = +3
Query: 252 CLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 431
CL +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT Y
Sbjct: 96 CLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTY 155
Query: 432 AQHTQVRAIRKKMCEII 482
AQ +Q+RAI +KM ++I
Sbjct: 156 AQSSQIRAIHQKMFQVI 172
Score = 52.4 bits (120), Expect = 7e-08
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = +2
Query: 509 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 628
+E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P
Sbjct: 182 KELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAP 221
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 108 bits (259), Expect = 1e-24
Identities = 49/84 (58%), Positives = 65/84 (77%)
Frame = +1
Query: 1 KGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 180
KG+KK++VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADL
Sbjct: 14 KGIKKRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADL 73
Query: 181 QADTDAERSFRKFRLIAEYVQGRN 252
Q D E +FRK +L E +QG++
Sbjct: 74 Q--KDEEHAFRKVKLRVEDIQGKS 95
Score = 99.5 bits (237), Expect = 5e-22
Identities = 43/86 (50%), Positives = 64/86 (74%)
Frame = +3
Query: 252 CLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 431
CL +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT Y
Sbjct: 96 CLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTY 155
Query: 432 AQHTQVRAIRKKMCEIITRDVTNSEL 509
AQ +Q+RAIR+KM ++I ++ +
Sbjct: 156 AQSSQIRAIRQKMFQVIQNQTSSCSM 181
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = +2
Query: 509 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 628
RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P
Sbjct: 182 RELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAP 221
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.9 bits (59), Expect = 1.7
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Frame = +1
Query: 31 FTRKDWYDVKAPSMFS--KRQVGTTLVNRTQGTKIASEG----LKGRVFEVSLADLQADT 192
FT + K PS + + Q G L + +++ SE +K ++F++ Q
Sbjct: 747 FTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKASRVISEADEEAMKNKIFKIE--GTQRKI 804
Query: 193 DAERSFRKFRLIAEY----VQGRNVSATSTAWTSQPISSGGWLKNGRL 324
S RK + EY + G N+ S W S WL G L
Sbjct: 805 LGIHSRRKLKNSYEYECSFLVGENIGMKSERWVPMMSSDNAWLPRGEL 852
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 275 HAVEVAETLRPCTYSAINLNLRKDLSASVSACRSARETSKTL 150
H +EV LRP TY + + D+ + + + R E S L
Sbjct: 260 HCLEVNSDLRPTTYQLLRSPILSDIRSKLESERVVLEQSDLL 301
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 380 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 472
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 297 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 434
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 276 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 374
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,456
Number of Sequences: 5004
Number of extensions: 63757
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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