Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00188
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 126 2e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 125 3e-29
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 125 5e-29
12_01_0389 + 3067808-3069121 29 4.2
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 4.2
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 4.2
06_03_0290 - 19193707-19193752,19193822-19194090 29 5.5
12_01_0727 + 6446283-6449300 28 7.3
03_02_0593 + 9693125-9693127,9693632-9693733,9694020-9694135,969... 28 7.3
10_01_0006 + 74000-76441 28 9.7
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 9.7
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 126 bits (304), Expect = 2e-29
Identities = 62/85 (72%), Positives = 72/85 (84%)
Frame = +1
Query: 1 KGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 180
KG KKK VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADL
Sbjct: 14 KGSKKKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADL 73
Query: 181 QADTDAERSFRKFRLIAEYVQGRNV 255
Q D D +++RK RL AE VQGRNV
Sbjct: 74 QNDED--QAYRKVRLRAEDVQGRNV 96
Score = 112 bits (269), Expect = 3e-25
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = +3
Query: 255 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 434
L NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYA
Sbjct: 97 LTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYA 156
Query: 435 QHTQVRAIRKKMCEIITRDVTNSEL 509
Q +Q+R IR+KM EI+ + +L
Sbjct: 157 QASQIRQIRRKMVEIMANQASTCDL 181
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = +2
Query: 509 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 628
+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P
Sbjct: 182 KELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAP 221
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 125 bits (302), Expect = 3e-29
Identities = 62/85 (72%), Positives = 71/85 (83%)
Frame = +1
Query: 1 KGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 180
KG KKK VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADL
Sbjct: 14 KGSKKKTVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADL 73
Query: 181 QADTDAERSFRKFRLIAEYVQGRNV 255
Q D D +++RK RL AE VQG+NV
Sbjct: 74 QNDED--QAYRKIRLRAEDVQGKNV 96
Score = 112 bits (270), Expect = 3e-25
Identities = 50/85 (58%), Positives = 65/85 (76%)
Frame = +3
Query: 255 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 434
L NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYA
Sbjct: 97 LTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYA 156
Query: 435 QHTQVRAIRKKMCEIITRDVTNSEL 509
Q +Q+R IR+KM EI+ ++ +L
Sbjct: 157 QASQIRQIRRKMVEIMVNQASSCDL 181
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = +2
Query: 509 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 628
+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P
Sbjct: 182 KELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 125 bits (301), Expect = 5e-29
Identities = 61/85 (71%), Positives = 71/85 (83%)
Frame = +1
Query: 1 KGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 180
KG KKK VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADL
Sbjct: 14 KGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADL 73
Query: 181 QADTDAERSFRKFRLIAEYVQGRNV 255
Q D D +++RK RL AE VQG+NV
Sbjct: 74 QNDED--QAYRKIRLRAEDVQGKNV 96
Score = 115 bits (276), Expect = 5e-26
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 255 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 434
L NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYA
Sbjct: 97 LTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYA 156
Query: 435 QHTQVRAIRKKMCEIITRDVTNSEL 509
Q +Q+R IR+KM EI+ ++ +L
Sbjct: 157 QASQIRQIRRKMVEIMANQASSCDL 181
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = +2
Query: 509 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 628
+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P
Sbjct: 182 KELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
>12_01_0389 + 3067808-3069121
Length = 437
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 252 CLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 356
CL FH +D++ D+LR +V L++A V T
Sbjct: 176 CLALFHALDVSADELRPLVADGHDLVDAVTRVMAT 210
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 512 EVVNKLIPDSIAKDIEKACHGIYPLRD 592
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 638 ISKRASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP*F 504
++ A++ SPF + GRC PS P S S+ +PPP F
Sbjct: 75 VAAAAAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPPVF 117
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = +1
Query: 118 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVSATSTAWTSQPISS 297
GT AS GL G + + + SF R+ A G S A T P S
Sbjct: 30 GTPAASRGLPGWP---GFCGVGCGSSSSSSFAPPRMQARRAAG------SAARTRSPSQS 80
Query: 298 GGWLKNGRLSSKPTLM 345
GW+ G S+ P+L+
Sbjct: 81 NGWITGGSASAMPSLV 96
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 658 EVPSTSRSRNGPLQHFHLSDANIAQRVDAMAGLL 557
++PST + L H LSD N A RV A G L
Sbjct: 121 QLPSTGFEKLTELTHLDLSDTNFAGRVPAGIGRL 154
>03_02_0593 +
9693125-9693127,9693632-9693733,9694020-9694135,
9694235-9694357,9694448-9694505,9694733-9694771
Length = 146
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +1
Query: 124 KIASEGLKGRVFEVSLADLQADTDAERSFR--KFRLIAEYVQGRNVSATSTAWTSQPISS 297
K + K R LA AD DA++ R +F +G + A SS
Sbjct: 62 KAEEQKRKSRAERFGLASSSADEDAKKKARLERFGQSTNVDKGEEEKRKARALRFAETSS 121
Query: 298 GGWLKNGRLSSKP 336
G +NG+ SSKP
Sbjct: 122 GPSQENGKDSSKP 134
>10_01_0006 + 74000-76441
Length = 813
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 581 GRCHGRPSRCPWQWSQESTCSPPP*FRVSDVAC 483
G C G + C Q + +TC PP +R + C
Sbjct: 275 GACQGEANICVPQGADNTTCVCPPGYRPQGLGC 307
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 165 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 73
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,087,265
Number of Sequences: 37544
Number of extensions: 448810
Number of successful extensions: 1332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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