Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00188
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          91   9e-19
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     34   0.15 
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  30   1.8  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               29   5.6  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 40/63 (63%), Positives = 53/63 (84%)
 Frame = +3

Query: 321 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 500
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 501 SEL 509
           ++L
Sbjct: 62  NDL 64



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +2

Query: 509 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 628
           +EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P
Sbjct: 65  KEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKP 104


>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
 Frame = +2

Query: 176 IYKLTLTR-KGLSANSD*SPNMCKDVMSLQLPRHGPH------NR*AQVDG*KMADSH 328
           ++KLT+T  KGL+ +   + N+ KDV    + R GP       NR A++DG K +D H
Sbjct: 306 VFKLTVTDDKGLTGSGTVAVNVKKDVNQAPVARAGPDVVVHLPNRAAELDGSKSSDDH 363


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 569 HGIYPLRDVCIRKVKVLKRPVSRSRS*WNFTAKAVEA 679
           HG+    DVCIRK  +    + RS   WN+   ++EA
Sbjct: 151 HGVITGMDVCIRKPLIATCSLDRSVRIWNYETCSLEA 187


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 215 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 36
           LRK L    S  +  RE  + L FNP E+ +V            L + ++  +   +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 154  VFEVSLADLQADTDAERSFRKFRLIAEYVQ 243
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 19  IVDPFTRKDWYDVKAPSMFSKRQ 87
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 202 RSFRKFRLIAEYVQGRNVSATSTAWTSQPISSGGWLKNGR 321
           R++ K  LI     G      +  W   P++  GW  NGR
Sbjct: 22  RTWHKAELIPPQWPGAQGQLRTVTWHGSPVTRNGWTWNGR 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,057,135
Number of Sequences: 59808
Number of extensions: 511797
Number of successful extensions: 1624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)