Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00188
         (786 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   147   3e-37
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    24   4.6  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   6.1  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  147 bits (357), Expect = 3e-37
 Identities = 69/85 (81%), Positives = 76/85 (89%)
 Frame = +1

Query: 1   KGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 180
           KG KKK+VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLKGRVFEVSLADL
Sbjct: 15  KGSKKKVVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADL 74

Query: 181 QADTDAERSFRKFRLIAEYVQGRNV 255
           Q + DAERSFRKF+L+AE V GR+V
Sbjct: 75  QNEPDAERSFRKFKLVAESVNGRDV 99



 Score =  137 bits (331), Expect = 4e-34
 Identities = 61/85 (71%), Positives = 74/85 (87%)
 Frame = +3

Query: 255 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 434
           L NFHGM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYA
Sbjct: 100 LTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYA 159

Query: 435 QHTQVRAIRKKMCEIITRDVTNSEL 509
           QH+Q++ IR KM  II R++T+++L
Sbjct: 160 QHSQIKNIRAKMTAIIKREITSTDL 184



 Score = 65.7 bits (153), Expect = 2e-12
 Identities = 30/38 (78%), Positives = 33/38 (86%)
 Frame = +2

Query: 515 VVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 628
           VV KL+PDSIAKDIEKAC  +YPL DV IRKVKVLK+P
Sbjct: 187 VVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKP 224



 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 604 KGESVEEARFEISKLMELH 660
           K + +++ RF++S LMELH
Sbjct: 217 KVKVLKKPRFDLSSLMELH 235



 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 714 GYEPPVQESV 743
           GYEPPVQ SV
Sbjct: 260 GYEPPVQASV 269


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 729 REARSLRPFRLVSGFP 682
           R  R LRP RLVSG P
Sbjct: 215 RAFRVLRPLRLVSGVP 230


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 607 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 521
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,126
Number of Sequences: 2352
Number of extensions: 17164
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)