Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00188
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.3  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   9.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   9.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.8  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 580 VDAMAGLLDVLGNGVRNQLVHHLPSSEL 497
           +D +   ++VLG+G    +V+HL  +EL
Sbjct: 473 LDRIRTSINVLGDGYGAGIVYHLSKAEL 500


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 57  QGSVYVQQEASRHH--ACQPYPGNENCFG 137
           Q S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFG 122


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 290 IGCEVHAVEVAETLRPC---TYSAINLNLRKDLSASVS 186
           IGC     E ++T  PC     S  +LN+RK  S +++
Sbjct: 91  IGCSAEKFECSKTSNPCLPHRNSDRDLNIRKWSSIAIN 128


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 221 LNLRKDLSASVSACRSARE 165
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 233 NMCKDVMSLQLPRHGPHN 286
           +MC DVMS    +HG  N
Sbjct: 63  DMCPDVMSAGESKHGLTN 80



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 602 GCKHRAEGRC 573
           GC  R EGRC
Sbjct: 132 GCGERTEGRC 141


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 71  IDGALTSYQSLRVNGSTIFFLTP 3
           IDG L S Q+  +   T F++TP
Sbjct: 162 IDGRLNSKQAAVIIAFTWFWVTP 184


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 233 NMCKDVMSLQLPRHGPHN 286
           +MC DVMS    +HG  N
Sbjct: 68  DMCPDVMSAGESKHGLTN 85



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 602 GCKHRAEGRC 573
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 233 NMCKDVMSLQLPRHGPHN 286
           +MC DVMS    +HG  N
Sbjct: 68  DMCPDVMSAGESKHGLTN 85



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 602 GCKHRAEGRC 573
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 71  IDGALTSYQSLRVNGSTIFFLTP 3
           IDG L S Q+  +   T F++TP
Sbjct: 162 IDGRLNSKQAAVIIAFTWFWVTP 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,404
Number of Sequences: 438
Number of extensions: 4223
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)