Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00188
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   128   5e-30
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           125   4e-29
At3g17380.1 68416.m02221 meprin and TRAF homology domain-contain...    35   0.070
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   1.5  
At5g42470.1 68418.m05170 expressed protein low similarity to BRE...    29   3.5  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   8.1  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  128 bits (308), Expect = 5e-30
 Identities = 64/85 (75%), Positives = 71/85 (83%)
 Frame = +1

Query: 1   KGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 180
           KG KKK VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADL
Sbjct: 14  KGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADL 73

Query: 181 QADTDAERSFRKFRLIAEYVQGRNV 255
           Q D D   ++RK RL AE VQGRNV
Sbjct: 74  QGDED--NAYRKIRLRAEDVQGRNV 96



 Score =  116 bits (278), Expect = 2e-26
 Identities = 50/85 (58%), Positives = 67/85 (78%)
 Frame = +3

Query: 255 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 434
           LC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++TCYA
Sbjct: 97  LCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYA 156

Query: 435 QHTQVRAIRKKMCEIITRDVTNSEL 509
           Q +Q+R IR+KM +I+ R+ ++ +L
Sbjct: 157 QSSQIRQIRRKMRDIMVREASSCDL 181



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/40 (57%), Positives = 33/40 (82%)
 Frame = +2

Query: 509 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 628
           +++V K IP++I ++IEKA  GIYPL++V IRKVK+LK P
Sbjct: 182 KDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAP 221


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  125 bits (301), Expect = 4e-29
 Identities = 63/85 (74%), Positives = 69/85 (81%)
 Frame = +1

Query: 1   KGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 180
           KG KKK VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADL
Sbjct: 14  KGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADL 73

Query: 181 QADTDAERSFRKFRLIAEYVQGRNV 255
           Q D D   ++RK RL AE VQGRNV
Sbjct: 74  QNDED--NAYRKIRLRAEDVQGRNV 96



 Score =  115 bits (276), Expect = 4e-26
 Identities = 50/85 (58%), Positives = 67/85 (78%)
 Frame = +3

Query: 255 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 434
           L  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI FT + +   ++TCYA
Sbjct: 97  LTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYA 156

Query: 435 QHTQVRAIRKKMCEIITRDVTNSEL 509
           Q +Q+R IR+KM EI+ ++ ++ +L
Sbjct: 157 QSSQIRQIRRKMSEIMVKEASSCDL 181



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 24/40 (60%), Positives = 33/40 (82%)
 Frame = +2

Query: 509 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 628
           +E+V K IP++I ++IEKA  GIYPL++V IRKVK+LK P
Sbjct: 182 KELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAP 221


>At3g17380.1 68416.m02221 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 309

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 163 VSLADLQADTDAERSFRKFRL-IAEYVQGRNVSATSTAWTSQPISSGGWLK 312
           ++L D +  +D  + F +F + I + +QGR+++   T W S+  S  GW+K
Sbjct: 224 LTLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVK 274


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -2

Query: 482 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 318
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At5g42470.1 68418.m05170 expressed protein low similarity to BRE
           alpha b isoform [Homo sapiens] GI:16326573
          Length = 382

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 314 FFNHPPELIGCEVHAVEVAETLRPCTYSAINLNLRKDLSASVSACRSA 171
           +  H  E +  ++H    A  LR     A++LNL + L A  + CR A
Sbjct: 247 YLPHLEETLERQIHEAVAAIDLRRSFIEALSLNLGRPLEADPTFCRKA 294


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 153  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 7
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,141
Number of Sequences: 28952
Number of extensions: 351796
Number of successful extensions: 972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)