Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00184
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    58   9e-10
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    29   0.81 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   5.7  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   7.5  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   7.5  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    25   9.9  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   9.9  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 26/42 (61%), Positives = 34/42 (80%)
 Frame = +2

Query: 254 GVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 379
           GV+G+G GIG +F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 16  GVSGAGVGIGLIFSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -2

Query: 426 AKSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMREPKTVPIPAPEPATPLS 247
           ++++ + ++    P A++    R+AY N      G L+        T PIP   P+TP+ 
Sbjct: 83  SRNNVSPVLTDLPPYAAEHPFSRLAYFNPAFNSPGILS----ASGLTSPIPESRPSTPMD 138

Query: 246 LHQHQ 232
            HQ +
Sbjct: 139 NHQER 143


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 357 FWVSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAILHMRFQCILSGVDSM-ESNVWKP 533
           FW+S  +    C+ +    CC +L+K+ + ++T  ++L   F+     V+   E N    
Sbjct: 684 FWMSNEVTSVNCTGIVLSFCCDNLAKIGSGQSTRVSVLLRLFKLAFMTVNVFPEKNAEVL 743

Query: 534 HPH 542
            PH
Sbjct: 744 RPH 746


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 38  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 151
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 483 QCILSGVDSMESNVWKPH 536
           QCI S  D  E ++WKP+
Sbjct: 387 QCIASVADDNELHIWKPN 404


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 112 HLQQYPPIHRWYLLSLHSSLQC 177
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 PTHTQMVPAVPTQLSAVRS 182
           P HT  VPAVP+Q+  + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -1

Query: 301 EGAEDCSNTSSGTSYSTVAAPAPMNLAAESMSLVTDVVWKDRTAESCVG---TAGTICVW 131
           EG  D +++   +  ++  +PAP+N A  SMS   +    + T+ +  G    +G I + 
Sbjct: 115 EGYADSNDSRPSSISNSSESPAPINSATASMSPANNTSGNNITSPNVRGELDMSGNIAMS 174

Query: 130 VGTAASGRTS 101
            G   +  TS
Sbjct: 175 GGPTNTASTS 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,180
Number of Sequences: 5004
Number of extensions: 60142
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)