Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00184
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   3e-17
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)               30   1.5  
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_16731| Best HMM Match : Neocarzinostat (HMM E-Value=0.93)           29   2.6  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   2.6  
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                29   2.6  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    29   4.5  
SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.5  
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)                 29   4.5  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          29   4.5  
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          29   4.5  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    28   6.0  
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)                       28   7.9  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         28   7.9  
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 41/42 (97%), Positives = 41/42 (97%)
 Frame = +2

Query: 254 GVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 379
           G AGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 114 GAAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = +3

Query: 96  SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFIGAGAAT 251
           +A +RP +       +VPA P   + A R FQT+S  +D+DSAAKFIGAGAAT
Sbjct: 61  TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAAT 112


>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
          Length = 565

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 230 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 126
           E   R NVLSD  GLE   CR  LC +  +  C  G
Sbjct: 76  EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111


>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1786

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 307  DDEGAEDCSNTSS-GTSYSTVAAPAPMNLAAESMSLVTDVV 188
            D++ A+ CS+TSS   +  TVAA    N+A  S S   + V
Sbjct: 1216 DEQNAQTCSSTSSLAEAIVTVAASVATNVATTSSSTTLEAV 1256


>SB_16731| Best HMM Match : Neocarzinostat (HMM E-Value=0.93)
          Length = 215

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 307 DDEGAEDCSNTSS-GTSYSTVAAPAPMNLAAESMSLVTDVV 188
           D++ A+ CS+TSS   +  TVAA    N+A  S S   + V
Sbjct: 3   DEQNAQTCSSTSSLAEAIVTVAASVATNVATTSSSTTLEAV 43


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
 Frame = -3

Query: 254  HCRCTSTN---EFGSRVNVL-----SDRC--GLEGPHCRELCRDSRYHLCMGGYCCKWSH 105
            +C+C S+    E G  ++V+     +D C    +   C   C    Y  C+ G C KW  
Sbjct: 1152 NCKCLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEYQ-CVSGACVKWPL 1210

Query: 104  QC---RVAEDG--RPGCRGDQSG 51
             C   +  EDG   PG  G Q G
Sbjct: 1211 TCDGKKDCEDGTDEPGICGVQIG 1233


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 460 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 353
           +V  LK    ESEE  E  H  EQ H  +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242


>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 405 WRSCCSSLSKLFTFKNTTTAILHMRFQCILSGVDSMESNVWKPHPHSDAR 554
           W + C+S SK    + +TT   H    C L G   +E   W P PH+  R
Sbjct: 156 WDNTCTSHSKC---QGSTT---HSIRPCTLQGRSPIEPTPWSPTPHTTGR 199


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 191  GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 99
            G  G  C +LC+   +++C G G C +W+  C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423


>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 191 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 42
           G + P   E CR   +  C    C +++HQC   E+G  P      S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 100 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 213
           HW + +    PI RW+ L   H+SL   P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165


>SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 218 CCQIHWCWCSDSGVAGSGAGIGTVFGSLI 304
           CCQ H  W SDSG    G    T +G  I
Sbjct: 255 CCQGHLTWRSDSGSCCGGRFYDTQYGRCI 283


>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
          Length = 718

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 32  KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 190
           ++  VC  TD+PC  + H ++ C   T   +T P    T C  T   S  +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 113 TCSSTHPYTDGTCCPYTALCSAV 181
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 239 STNEFGSRVNVLS-DRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRG 63
           ST E  +R+ ++S D+C  +   CR+ C+ S   + MG  C + + + ++A    P C G
Sbjct: 8   STQEKLTRIAIVSTDKC--KPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISEPLCIG 65


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 113 TCSSTHPYTDGTCCPYTALCSAV 181
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 170 RELCRDSRYHLCMGGYCCKWSHQCR 96
           R  CR    HLC+G   C+W  Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197


>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
          Length = 519

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 248 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRY 144
           R T T +FG +VN+ S    LEG   R+   D+ +
Sbjct: 16  RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -1

Query: 430 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 290
           +  + QER  +TEQTH       QG+ Q    +Q  ++G   G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 448 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 356
           LK    E E+QQ +HHK E+     Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,631,488
Number of Sequences: 59808
Number of extensions: 533619
Number of successful extensions: 2009
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)