Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00183
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    30   0.018
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.39 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.5  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 354 CHPTTCMLRANATCGAGTCCDLQTCRPKSAGTVCRRSEKECDLPEYCTGQSDSVRTT-FT 530
           C  T+CM     TC  G    + TC+P   G+ C+     CD      G +    TT +T
Sbjct: 27  CTETSCM--NGGTCIDGINSYICTCKPGFTGSNCQNRINLCDSSPCLNGATCQDHTTHYT 84

Query: 531 RWTPY 545
              PY
Sbjct: 85  CHCPY 89



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
 Frame = +3

Query: 267 CGNGFIEPGEQC-----DCGMTPDRSGRSDCHRCCHPTTCMLRANAT----------CGA 401
           C  GF   G+ C     DC   P ++G + CH   +  +C   +             C  
Sbjct: 210 CPKGF--QGQNCELNVDDCKPNPCQNGGT-CHDLVNSFSCSCPSGTLGYICEINVDDCRP 266

Query: 402 GTCCDLQTCRPKSAGTVCR 458
           G C +  TC  K  G  C+
Sbjct: 267 GACHNNGTCLDKVGGFECK 285


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 91   DTEEHCEC-PDEKCIMSPSSTSVIP 162
            D  E+ EC PD    M+PS+T ++P
Sbjct: 2277 DWPENTECHPDASSTMAPSTTPMVP 2301



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 309  GMTPDRSGRSDCHRCCHPTT 368
            G+ PD   R DC +   P T
Sbjct: 992  GLIPDNPSREDCTKPPEPVT 1011


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 492 STPGGRTPSPISDTPSPLTWVGKSADRSRSPRRTS 388
           STP      P+  TP P  WV + +  S + R T+
Sbjct: 417 STPSADGSKPVQTTPKPGQWVPEKS-TSTTQRTTT 450


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 6   RGHESL*GAGSGGHDHSPRDGPQLRHGA 89
           RG     GAG   HDH P    Q R  A
Sbjct: 291 RGAARADGAGGPLHDHRPALAQQRRVAA 318


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 58 GLWSWPPDPAPQSDSWP 8
          G++   P PAPQS + P
Sbjct: 5  GIYEESPPPAPQSAATP 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,901
Number of Sequences: 336
Number of extensions: 3663
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)