Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00183
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    79   7e-16
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    26   7.1  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    26   7.1  
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    26   7.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.4  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   9.4  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 79.0 bits (186), Expect = 7e-16
 Identities = 41/98 (41%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
 Frame = +3

Query: 225 LSEEQASSFIQSPTCGNGFIEPGEQCDCGMTPDRSGRSDCHR--CCHPTTCMLRANATCG 398
           LS+    S ++  TCGNG +E GE+CDCG         DC    CC   TC L   + C 
Sbjct: 304 LSKPSEKSVLRLGTCGNGIVEDGEECDCG--------EDCENNPCCDGKTCKLTKGSLCD 355

Query: 399 --AGTCCDLQTCRPKSAGTVCRRSEKECDLPEYCTGQS 506
                CC    C  K+AGT+CR+S   CD PE+CTG S
Sbjct: 356 DQQDACC--YQCHFKNAGTLCRQSTNPCDKPEFCTGIS 391



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 512 CPDDVYKMDTIPCNH--GQAYCVKGSCRSHTDQCRLLWGVTGESSH-DKCYMSANVKGNK 682
           CP D    D   C    G   C  G C S + QC+ L   +  S H D C +S     N+
Sbjct: 394 CPVDENWDDGRICQDSLGMGSCASGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQ---NE 450

Query: 683 NGNC 694
           +G C
Sbjct: 451 DGTC 454



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 16/64 (25%)
 Frame = +1

Query: 52  IAHEMGHNFGMEHDTE-----EHCE--CP--------DEKCIMSPS-STSVIPVRWSSCS 183
           +AHE+GH  G+ HD       +H E  CP         E  IM+PS S +   +R+S CS
Sbjct: 227 VAHEIGHILGLIHDCNKKSCGDHSEACCPLSSSLCDAQELYIMNPSNSYTYANLRFSDCS 286

Query: 184 LKSL 195
           +  L
Sbjct: 287 ILQL 290


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 372 MLRANATCGAGTCCDLQTCRPKSA 443
           M++ +  C  G    +Q CRP+SA
Sbjct: 42  MVQDDLNCNVGDAVTIQPCRPRSA 65


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 623 RPTAAGTGPCASGKSPSRSTPVH 555
           RP AAG    A+  S ++S+PVH
Sbjct: 196 RPPAAGQDDSAADASTTKSSPVH 218


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/37 (27%), Positives = 13/37 (35%)
 Frame = +2

Query: 584 CRSHTDQCRLLWGVTGESSHDKCYMSANVKGNKNGNC 694
           C S  D C ++WG      H  C  +        G C
Sbjct: 38  CTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQC 74


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 106  SAPPCRAPCRSCGPSRGLWSWPPDPAPQSDSWP 8
            S  P  AP  +  PS+  ++  P PAP +   P
Sbjct: 1508 SVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHP 1540


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 106 SAPPCRAPCRSCGPSRGLWSWPPDPAPQSDSW 11
           SA   +AP      + GL   PP P P +D W
Sbjct: 288 SASKTQAPSSGDSANGGLPPPPPPPPPSNDFW 319


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 382 ARSMHVVGWQQRWQSLLPLRSGV 314
           ARSM VV W   W +LL   +GV
Sbjct: 137 ARSMPVVAWVVGWLNLLGQAAGV 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,245
Number of Sequences: 5004
Number of extensions: 54869
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)