Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00183
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.15 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   7.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 483 GGRTPSPISDTPSPLTWVGKSADRSRSPRRTSHWH 379
           GG  P+P++ TP+ +  + + A   R+ RRT   H
Sbjct: 153 GGSLPTPVTPTPTTVQQLLRRAQIRRNERRTPDPH 187


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 18/69 (26%), Positives = 25/69 (36%)
 Frame = +1

Query: 4   GVATNHSEVLGLVATTIAHEMGHNFGMEHDTEEHCECPDEKCIMSPSSTSVIPVRWSSCS 183
           G+A+  S +L LV  T+A   G        TEE          + P S       W  C 
Sbjct: 53  GIASGLSAMLSLVVVTVAISTGEWL----LTEEKLPKTSSNASVEPDSKVTYSGLWRVCV 108

Query: 184 LKSLALSFE 210
             S  + +E
Sbjct: 109 AISSRMEYE 117


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 547 VQPWTGVLREGLLP 588
           ++PW GVL   +LP
Sbjct: 83  IEPWHGVLNATVLP 96


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 547 VQPWTGVLREGLLP 588
           ++PW GVL   +LP
Sbjct: 83  IEPWHGVLNATVLP 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,673
Number of Sequences: 438
Number of extensions: 4046
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)