Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00182
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 31 0.25
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 3.0
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 4.0
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 26 5.3
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 5.3
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.3
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 7.0
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 9.3
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 9.3
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.3
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 691 CVLTCLARSMGRTSRSLT*ASILNTANSS 605
C ++CL RS R SRS + +S+LN N S
Sbjct: 22 CDISCLGRSSWRMSRSFSGSSVLNEINLS 50
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 492 PVPYLLAFNACMSLLGLLAYLRTQCLTEFENTSWIQLALLLAVFSIEAYVRLRL 653
PV + F +L L+YL+T+ F N + A L V + +A++R R+
Sbjct: 520 PVGRAMIFQQTHTLFKSLSYLKTESTDPFSNKR-TRKAALWCVLTADAWLRCRI 572
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +2
Query: 5 SRTDVLNRMCNMCTRDVTLEAPTPPKVSRTLERMKLKHNITTDPVNEEKQRE 160
S V+N N+ + + L T K++RT+ ++K+ ++ +PV+ +E
Sbjct: 752 SSLKVVNLSSNILEK-IKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQE 802
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 538 PSKLMQALNASR*GTGWSARG--RTRVSEGRSIGRYRTQASSISELRGEWPR 389
P L LNAS + A G +++S+ G Y T +++S L G WP+
Sbjct: 377 PIFLCYTLNASFSTIQFVALGVFHSKISDPHIGGTYMTILNTLSNLGGSWPQ 428
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -1
Query: 727 PTSWPPPADSSICVLT-CLARSMGRTSRSLT*ASILNTANSSASCIHEVFSNSVRHCVRR 551
P+S+PP A+S++ V + + + + S A S V + SV+ CV
Sbjct: 898 PSSYPPAAESNVSVSSDTSTKDVEKQEPSSAEQPAQGIAESLRRLKEYVKAGSVKECVAE 957
Query: 550 YARSPS 533
+ PS
Sbjct: 958 WCNMPS 963
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 445 GRYRTQASSISELRGEWPRPPRTAPSSRG 359
G T + IS L+ + PP TAP S G
Sbjct: 52 GASNTSTNQISSLKVDVSSPPSTAPGSAG 80
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 74 PPKVSRTLERMKLKHNITTDPVNEEKQREVEYQPDLL 184
PP S ++ R H+ T+ NE+ E +++PD++
Sbjct: 365 PP--SSSISRSSTIHSCTSSKRNEDSLSESDFEPDII 399
>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 9.3
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 168 YSTSLCFSSLTGSVVILCFNFIRSKVRDTFGGVGASSVTSRVHILHILFNTS 13
Y T SS+T S + IR+ V + FG VG V S + + + NTS
Sbjct: 24 YPTIPSDSSITTSSLS---KIIRTMVAENFGDVGIGKVASSLTVKYFSPNTS 72
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 192 PLSTRKLLMMSSNRLS*DYKSEGIRYSDT 278
PLST K L++ SN S + + + SDT
Sbjct: 161 PLSTNKKLIIQSNNTSSQHSTPPLSISDT 189
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 643 LT*ASILNTANSSASCIHEVFSNSVRHCVRRYARSP 536
L+ +S+ +S ++E +SN +C RRY P
Sbjct: 399 LSKSSLATPRPKLSSLLYENYSNQCANCGRRYGNDP 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,595
Number of Sequences: 5004
Number of extensions: 58753
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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