Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00182
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976 52 7e-07
12_02_0747 - 22743259-22743268,22743686-22743773,22744334-227443... 50 3e-06
12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337 44 1e-04
04_03_1000 + 21604164-21605387,21605467-21605817 42 4e-04
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 30 1.8
10_08_0785 - 20536265-20537032 29 3.2
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 29 3.2
11_06_0184 - 21006659-21009823 29 5.5
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576... 29 5.5
05_05_0311 - 24004380-24004440,24004685-24004756,24004875-240049... 28 7.3
>11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976
Length = 211
Score = 51.6 bits (118), Expect = 7e-07
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 346 SASNVRGWRALYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIY 507
S + V R +V AT GA +W+T + GIV++ LPRH+FG +Q +FP Y
Sbjct: 32 SGAGVAAARLAHVLCFATAWGAALWVTFIGGIVMFKYLPRHQFGSLQGKMFPAY 85
>12_02_0747 -
22743259-22743268,22743686-22743773,22744334-22744395,
22744728-22744915,22746276-22746495,22746647-22746855
Length = 258
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +1
Query: 394 ATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIY 507
AT GA +W T + GI+++ +LPRH+FG +Q LFP Y
Sbjct: 51 ATSWGAALWATFIGGIIMFKNLPRHQFGNLQGKLFPAY 88
>12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337
Length = 200
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +1
Query: 370 RALYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFP 501
+A+++ AT G +W LV G++++ +LPRH GR++ +FP
Sbjct: 27 KAVHLLCFATSWGVTVWAILVGGVIMFLNLPRHAMGRLRGKVFP 70
>04_03_1000 + 21604164-21605387,21605467-21605817
Length = 524
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 394 ATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYSRS 516
A GA +W+T VS VL +LPR + VQ+ LFP+Y R+
Sbjct: 318 AAAYGASLWVTFVSSYVLAAALPRQQLAMVQSKLFPMYFRA 358
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 425 RLCPVSSYTSPFRDTSSAACRPSCSLSTRV--QRLHELAGTPGVPPHTVP 568
R P +S +S +SSA PSCS T RL EL+ P +PP P
Sbjct: 266 RASPANSSSSS--SSSSAPSTPSCSSDTAASRSRLPELSKLPPIPPPPPP 313
>10_08_0785 - 20536265-20537032
Length = 255
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 23 NRMCNMCTRDVTLEAPTPPKVSRTLERMKLK 115
N C C R + L+ P+PPK R E + L+
Sbjct: 193 NSSCPSCRRPIVLDDPSPPKRCRKCEAIVLE 223
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 406 GAQIWMTLVSGIVLYFSLPRHEFGRVQTI-LFPIYSRSTP 522
G + L+ G+V + S+ RH++ RV + + P +RSTP
Sbjct: 742 GIDSYRELIQGVVEHPSIYRHDWSRVNELSILPCGNRSTP 781
>11_06_0184 - 21006659-21009823
Length = 1054
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 347 QLVTSAAGGRCTWGPWPLTSELR 415
+L T + GG C W PW + + R
Sbjct: 79 ELYTQSGGGHCGWQPWTMVARHR 101
>03_05_0793 +
27755704-27756386,27756473-27757274,27757379-27757634,
27758355-27758566,27760494-27760709
Length = 722
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +3
Query: 507 LAFNACMSLLGLLAYLRTQCLTEFENTSWIQLALLLAV 620
L AC SLLGL+AYLR C I+ LL V
Sbjct: 333 LVSTACRSLLGLVAYLRA-CFPTVSRQQAIRYLLLAEV 369
>05_05_0311 -
24004380-24004440,24004685-24004756,24004875-24004946,
24005155-24005298,24005535-24005606,24006057-24006286
Length = 216
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 56 TLEAPTPPKVSR--TLERMKLKHNITTDPVNEE 148
T+ P PP + + +L+ M++ HN+ T P+ E
Sbjct: 131 TISGPIPPSLGKLKSLKFMRIDHNLLTGPIPNE 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,644,422
Number of Sequences: 37544
Number of extensions: 470010
Number of successful extensions: 1554
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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