Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00182
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_20782| Best HMM Match : OGFr_III (HMM E-Value=2.5)                  29   3.2  
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)                      29   3.2  

>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -1

Query: 544 RSPSKLMQALNASR*GTGWSAR--GRTRVSEGRSIGR--YRTQA--SSISELRGEWPRPP 383
           RSP +  +A+ +SR     + R  GR    +GR  GR  +R  A  S     R  WPRPP
Sbjct: 580 RSPPRQAEAIGSSRDVGKETVRDGGRDSGRDGRDTGRESWRDGARDSGRDSERKRWPRPP 639

Query: 382 RTAPS 368
              P+
Sbjct: 640 SPEPA 644


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 491  SCSLSTRVQRLHELAGTPGVPPHTVPYGIREHLMDTASTTVSSIQYRGLRE 643
            SC++   +  LH       +P H VP  I    M ++S  +SS    G  E
Sbjct: 878  SCAIPVHISDLHTSLSAESLPLHAVPNDIAPIRMSSSSDELSSANLEGDHE 928


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 156  LCFSSLTGSVVILCFNFIRSKVRDTFGGVGASSVTSRVHILHILFNTSVRDR 1
            LC+S+L G   +L ++  RSK   T G V        + IL + +   + D+
Sbjct: 1905 LCYSTLLGLSYLLSYDLSRSKSLQTVGSVSGLRPLGDLTILFLHYTDGIPDQ 1956


>SB_20782| Best HMM Match : OGFr_III (HMM E-Value=2.5)
          Length = 251

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 545 QESQQAHAGVERE*IGNRMVCTRPNSCLGREKYRTIPDT 429
           ++ ++A AGV  E I    V  RPN  +G   ++ +P T
Sbjct: 188 EDEEEAKAGVSAEAIVQGKVTLRPNLFIGLSAFKPVPST 226


>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
          Length = 1183

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 14  DVLNRMCNMCTRDVTLEAPTPPKVSRTLERM 106
           D + R  ++  RD  +    PPKVSRT+ER+
Sbjct: 190 DAVERYNSLAGRDGVVTGIRPPKVSRTVERL 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,098,810
Number of Sequences: 59808
Number of extensions: 531177
Number of successful extensions: 1668
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)