Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00182
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/42 (19%), Positives = 19/42 (45%)
 Frame = -1

Query: 562 CVRRYARSPSKLMQALNASR*GTGWSARGRTRVSEGRSIGRY 437
           C+ R  +  +K+   +  +  G GW  +    + +G  + +Y
Sbjct: 484 CINRVVQRGTKMQFCIFRTANGRGWGVKTMKTIKKGSFVTQY 525


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 185 PGGPAGTPP 159
           PGGP G PP
Sbjct: 48  PGGPPGAPP 56


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 382 VGAVATHLGAQIWMTLVSGI 441
           VGA ATH  + IW  +  G+
Sbjct: 338 VGASATHGASGIWGIIAIGL 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,455
Number of Sequences: 438
Number of extensions: 4197
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)