Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00180
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   5.9  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   5.9  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   5.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   5.9  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   7.8  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 352 ANPGCGPKIGEL 387
           A+PGCGP  G L
Sbjct: 388 ASPGCGPGQGGL 399


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +1

Query: 358 PGCGPKIGELYQKWNKPIAGVAIGVACVEV 447
           P C     E    W KP   V +G   V+V
Sbjct: 51  PACRLFCSEAAALWPKPTGEVHVGTTLVKV 80


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 1   VLGMLWSDTRESLHGRHVRNLFAGDHHCASGDQRPPLHLRREH 129
           ++  +WS ++  +   H+      DH       RPP H   EH
Sbjct: 229 IVRTIWSKSKLLIPVGHIPIRQCDDHR-----DRPPRHFHEEH 266


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 352 ANPGCGPKIGEL 387
           A+PGCGP  G L
Sbjct: 388 ASPGCGPGQGGL 399


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 124 LAVGEEEDADHHLHNDDHQQKDCVRDD 44
           L+  E+E+ +H L + D   ++   DD
Sbjct: 20  LSKKEDEEVEHRLSDRDDDDENITVDD 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,367
Number of Sequences: 336
Number of extensions: 2311
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)