Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00180
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    29   0.51 
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    28   1.2  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.1  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    27   2.7  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   4.8  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   6.3  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   6.3  

>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 280 LPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVAIGV--ACVEVVG 453
           L  +C    S L  FAG+      A     PKI +   +W  P+  VA+ V  AC+  + 
Sbjct: 342 LTSACSSGNSFL--FAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLN 399

Query: 454 A 456
           A
Sbjct: 400 A 400


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 148 IHNALL-DALAVGEEEDADHHLHNDDHQQKD 59
           +H+ +L D LA     D D  L  D+H QKD
Sbjct: 56  LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 134 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 244
           ESI+  + V FK+R+D N  E     F EL +Q F  C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 253 SVTAAFELSLQFRENSLGGLVC 188
           +VT A ++    REN+L GLVC
Sbjct: 725 AVTTALKMLCSIRENNLDGLVC 746


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 497 SMFLMELARHSANRAPTTSTQATPIATPAIGLFHFW*SSPILGPQPGFAASTVQLLPA 324
           +MF M    ++   AP T+    PI+ P    F       +  P+ G  +ST  + PA
Sbjct: 297 AMFTMPDQNYTIEEAPPTAEPWEPISAPKKQEFGVSLPPSLASPEKGGISSTTSVSPA 354


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 115 GEEEDADHHLHNDDHQQKDCVRDDH 41
           G ++   HH H+ DH   D    DH
Sbjct: 10  GSDDSTHHHTHDYDHHNHDHHGHDH 34


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +1

Query: 385 LYQKWNKPIAGVAIGVACVEVVGALFALCLANSIRNMDRRSPTNILYIINWYA*NEDITR 564
           L  KWN      A  + CV V      L L NS  N D     N L ++N +  N  + R
Sbjct: 41  LMDKWNSIPEDDAANLGCVRVKNDEIQLLLQNSPENADVPKIYN-LRVMNKFVRNSYVFR 99


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/84 (20%), Positives = 30/84 (35%)
 Frame = -2

Query: 528 NVQNISR*PSVHVSYGIGEAQREQGSYHLNTSNTDSNAGYRLVPFLVELADLGTAAGIRG 349
           ++ N    P +   Y      ++      NT+NTD +A         +++D+ T      
Sbjct: 85  SIPNEPEIPDMQDEYSRDSHSQQSVEEQNNTTNTDEDASVNEFSVAADISDVNTLGKDNS 144

Query: 348 VDRAVVAGEGREDALLDATGLGQR 277
                   E  E A L    +G+R
Sbjct: 145 ESTEEPVNEVNETATLGNEDVGER 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,573
Number of Sequences: 5004
Number of extensions: 38353
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)