Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00180
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 33 0.13
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 30 1.2
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 2.8
09_06_0240 + 21797458-21799369,21799636-21799784 29 2.8
01_05_0698 + 24376193-24376708 29 2.8
11_06_0659 - 25976268-25976419,25976486-25976675,25981350-259819... 29 3.7
11_02_0104 + 8329231-8329902 29 3.7
11_02_0093 - 8238947-8239615 29 3.7
07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425 29 3.7
03_04_0035 - 16685674-16686376,16686594-16686640 29 3.7
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 4.9
02_04_0175 + 20642877-20643618,20643844-20643955,20644052-206441... 28 4.9
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295... 28 4.9
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 283 PESCCVKKSILSTFAGNNCTVDAA 354
P SCCV+K I+S F NCT D A
Sbjct: 53 PASCCVRKIIVSNFLPLNCTKDEA 76
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 130 DALAVGEEEDADHHLHNDDHQQKDCVRDDHAV 35
D + EE+D DHH H+ H D +HA+
Sbjct: 320 DTFRIAEEDDDDHHHHHHYHGDADDDDGEHAM 351
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 313 LSTFAGNNCTVDAANPGCGPKI--GELYQKWNKPIAGVAIGVACVEVVGALF 462
LST AG C + P CGP+ G Q+W + G VE++GALF
Sbjct: 111 LSTGAG--CAI-RPRPRCGPRARSGVAAQQWRHGRTVASEGRQSVELIGALF 159
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 313 LSTFAGNNCTVDAANPGCGPKIGELYQKWNK 405
++ N+C + A G G KI E+ Q WN+
Sbjct: 622 IAVLVKNHCANETAQDGLGFKIDEIVQAWNE 652
>01_05_0698 + 24376193-24376708
Length = 171
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 406 PIAGVAIGVACVEVVGALFALCLANSIRN 492
P+AGV + A V V ALF CLA +R+
Sbjct: 126 PVAGVLVMGADVAGVSALFGFCLAEYLRH 154
>11_06_0659 -
25976268-25976419,25976486-25976675,25981350-25981967,
25982021-25982248,25982557-25982763
Length = 464
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 291 GLGQRELAVVDSAVLPQHSNCRCNSEKT 208
G G+RELAV+D + + S C C + T
Sbjct: 430 GRGRRELAVIDGTLRRKGSPCACTTATT 457
>11_02_0104 + 8329231-8329902
Length = 223
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 450 YHLNTSNTDSNAGYRLVPFLVELADLGTAAGIRGV 346
+HLN S N GY V + AD GTAA G+
Sbjct: 63 FHLNASKYSGN-GYSTVCLKLHTADSGTAAAAGGI 96
>11_02_0093 - 8238947-8239615
Length = 222
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 450 YHLNTSNTDSNAGYRLVPFLVELADLGTAAGIRGV 346
+HLN S N GY V + AD GTAA G+
Sbjct: 63 FHLNASKYSGN-GYSTVCLKLHAADSGTAAAAGGI 96
>07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425
Length = 370
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 452 PTTSTQATPIATPAIGLFHFW 390
PTT+ ++P + PAIG H+W
Sbjct: 80 PTTTAASSPFSPPAIGSPHWW 100
>03_04_0035 - 16685674-16686376,16686594-16686640
Length = 249
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 139 ALLDALAVGEEEDADHHLHNDDHQQK 62
ALL L E++D DHH H+ H +
Sbjct: 224 ALLGQLEAEEDDDGDHHHHHHHHHHQ 249
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -1
Query: 121 AVGEEEDADHHLH--NDDHQQKDC 56
++ EE +DHH H N++H+ +DC
Sbjct: 969 SISIEESSDHHEHHHNEEHKAEDC 992
>02_04_0175 +
20642877-20643618,20643844-20643955,20644052-20644174,
20644258-20644509,20644510-20644639,20644719-20644928,
20645280-20645426
Length = 571
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 409 IAGVAIGVACVEVVGALFALCLANSIRNMDRRSP 510
+ GVA+G A V + L LCL S R RR P
Sbjct: 20 LVGVAVGAAFVLFLVLLSVLCLLASRRRRRRRGP 53
>01_06_0288 -
28228673-28228744,28228866-28229071,28229316-28229554,
28229649-28229705,28229787-28229873,28229963-28230507,
28231574-28231714
Length = 448
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +1
Query: 85 ASGDQRPPLHLRREH---QGEHYGWRRR 159
A+ + PL LRRE +GE GWRRR
Sbjct: 3 AAAREEQPLLLRREEGEEEGEEVGWRRR 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,708,698
Number of Sequences: 37544
Number of extensions: 286326
Number of successful extensions: 1098
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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