Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00180
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 50 1e-06
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.011
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 37 0.011
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 37 0.014
SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13) 35 0.057
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.099
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 29 2.1
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06) 29 2.1
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 29 2.8
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 29 2.8
SB_4913| Best HMM Match : CBF (HMM E-Value=2.9) 28 4.9
SB_32709| Best HMM Match : Spectrin (HMM E-Value=8.8) 28 4.9
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 28 6.5
SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_9139| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_54514| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/83 (28%), Positives = 38/83 (45%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVLFKKRSD 181
FL CCGA++ES CM+ TY + Y E I++++ + +
Sbjct: 74 FLACCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRERIEKNLHGDIRSTMNEYHL 133
Query: 182 ANADEAAEAVFSELQRQFECCGN 250
+ D A+ E+ R F+CCGN
Sbjct: 134 SGHDAVTRAI-DEIHRDFKCCGN 155
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 280 LPESCCVKKSILSTFAGNNCTVDAAN---PGCGPKIGELYQKWNKPIAGVAIGVACVEVV 450
+P SCC S + N + D GC + + I+G I +A ++++
Sbjct: 174 VPRSCCKDPS--DSKCNENISKDPTKIYRRGCYMFVKKYLSNNLHVISGFGIWIAVIQLM 231
Query: 451 GALFALCLANSIRNM 495
G +FA CL IR +
Sbjct: 232 GIIFATCLCCHIRTI 246
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/82 (20%), Positives = 34/82 (41%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVLFKKRSD 181
F GCCGAI+E C++ T+ + Y ++E + + +
Sbjct: 341 FFGCCGAIKEHRCLLATFFALLFIILAVEITGTALGYVYRNKVEEQLGKDMNDTIVSYGE 400
Query: 182 ANADEAAEAVFSELQRQFECCG 247
+ +A + +Q++ +CCG
Sbjct: 401 KGKEGITDA-YDAIQKKEKCCG 421
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 280 LPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVAIGVACVEVVGAL 459
+P+SCC K++ N D GC + L + I G+ IGVA ++++ +
Sbjct: 441 VPDSCC--KTVSKGCGINFKENDIYTKGCFDTVKTLLKDNLIIIGGIGIGVAVIQILAMI 498
Query: 460 FALCLANSI 486
FA+ L I
Sbjct: 499 FAMVLVCKI 507
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/82 (24%), Positives = 39/82 (47%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVLFKKRSD 181
F GC GA+RE+ C++ ++ F + + ++ I++ + K D
Sbjct: 62 FSGCIGALRENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVEAVIVEKLQTAVTKYRD 121
Query: 182 ANADEAAEAVFSELQRQFECCG 247
NAD + + +Q++F+CCG
Sbjct: 122 -NAD--LQNLIDGVQQEFKCCG 140
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 277 TLPESCCVKKSILSTFAGNNCTVDAANP--GCGPKIGELYQKWNKPIAGVAIGVACVEVV 450
++PESCC + S + N GC + ++ I GVA+G+A +++
Sbjct: 305 SVPESCCKDTKVKSCNLEVLSHPETINSEQGCYGAAVKYFEDKLVIIGGVALGLAVFQLI 364
Query: 451 GALFALCLANSIRN 492
G F+ CLA+++ N
Sbjct: 365 GIAFSCCLASTLHN 378
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVT 52
F+GCCGA++E C++ T
Sbjct: 232 FIGCCGALKEHTCLLKT 248
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVLFKKRSD 181
F GCCGA +E+ CM++ + + + I+ + D + K+
Sbjct: 422 FFGCCGAWKENKCMLILFFILLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYPK 481
Query: 182 ANADEAAEAVFSELQRQFECCG 247
N +A +Q FECCG
Sbjct: 482 NN-----KAAIDAMQMDFECCG 498
>SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13)
Length = 347
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 127 ALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQE 2
AL GE+ + D L NDDH + D + DD L + S+E
Sbjct: 47 ALHEGEDVEGDDDLDNDDHDEDDVLADDSVDDLVAEESLSEE 88
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 33.9 bits (74), Expect = 0.099
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVT 52
F GCCGA++ES CM+ T
Sbjct: 329 FFGCCGAVKESRCMLAT 345
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVLFKKRSD 181
FLGCCGA +E+ CM++ + + + I+ + + ++
Sbjct: 69 FLGCCGAWKENKCMLICFFAFLLLLLILEIVGGALAYNNKDKIENRLDKDI-----LKAI 123
Query: 182 ANADEAAEAVFSELQRQFECCG 247
N E +++Q +F+CCG
Sbjct: 124 ENYPGKNEKSINDMQTKFKCCG 145
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 277 TLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVAIGVACVEV 447
++P+SCC + G D GC I +K KPI G+AI V ++V
Sbjct: 163 SVPDSCCKSEKAGCGVGGVKDPKDIYTKGCFTIIKGEIEKSLKPIGGLAIAVLVIQV 219
>SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 31.1 bits (67), Expect = 0.70
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 2 FLGCCGAIRESHCMV 46
F GCCGAI+ES C++
Sbjct: 41 FFGCCGAIKESRCLL 55
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Frame = +2
Query: 8 GCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGV-GVLFKKRSDA 184
GC GA+RE+ C++ Y F Y + ++ + + + R
Sbjct: 121 GCIGALRENRCLLTAYIWMCGIILAGMIVCGGLGFYYKDVLETKVTAQLKDAIVLYRDPT 180
Query: 185 NADEAAEAVFSELQRQFECCGNTALS 262
D + +Q + +CCG L+
Sbjct: 181 KGD--LHLIIDTVQTELQCCGVQGLN 204
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/82 (21%), Positives = 33/82 (40%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVLFKKRSD 181
F GC GA+RE+ C + Y +T + + +++ + + KK D
Sbjct: 93 FFGCVGALRENTCFLTVYGTSVFLCLILLIACGAVAYTQKDKV-QALKERLKQDLKKYLD 151
Query: 182 ANADEAAEAVFSELQRQFECCG 247
D + + +Q +CCG
Sbjct: 152 ---DPLNQDLIDFMQTLLKCCG 170
>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
Length = 187
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVT 52
F+GCCGA++E C++ T
Sbjct: 90 FIGCCGALKEHTCLLKT 106
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 29.1 bits (62), Expect = 2.8
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVV 49
F+GCCGA++E+ C ++
Sbjct: 214 FVGCCGAVKENKCFLL 229
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTY-GES--------IKESIMDGV 154
F GC GA +E+ CM+ T+ + Y G++ +K+ I +
Sbjct: 71 FFGCLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAYNYRGKNSLNSDSVKVKDEIESDL 130
Query: 155 GVLFKKRSDANADEAAEAVFSELQRQFECCG 247
K ++ + F LQ + +CCG
Sbjct: 131 TKALKGDYGSSGQDGVTKAFDALQEKQKCCG 161
>SB_4913| Best HMM Match : CBF (HMM E-Value=2.9)
Length = 328
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 143 MDGVGVLFKKRSDANADEAAEAVFSELQR 229
+ G+G++FK+R+ N +F ELQR
Sbjct: 55 LKGLGLMFKQRTGRNLPMTHPVIFDELQR 83
>SB_32709| Best HMM Match : Spectrin (HMM E-Value=8.8)
Length = 230
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 143 MDGVGVLFKKRSDANADEAAEAVFSELQR 229
+ G+G++FK+R+ N +F ELQR
Sbjct: 55 LKGLGLMFKQRTGRNLPMTHPVIFDELQR 83
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/82 (20%), Positives = 30/82 (36%)
Frame = +2
Query: 2 FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVLFKKRSD 181
F GC GA++E+ + +Y F +E ++D L
Sbjct: 88 FFGCVGALKENTLFLASYGIFIFCCLIPIIAAGVLAFLQ----REKLVDPKARLEDGLKS 143
Query: 182 ANADEAAEAVFSELQRQFECCG 247
D + + +Q +F+CCG
Sbjct: 144 YQQDSSKQEFIDFIQTRFKCCG 165
>SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +1
Query: 328 GNNCTVDAANPGCGPKI-GELYQKW 399
G C ++ NPGCG K + KW
Sbjct: 535 GGRCPIECQNPGCGIKFCSDCEHKW 559
>SB_9139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 539 TPKMKTSRDEHSNKKKKKK 595
TPK +TS++ ++NKK+KKK
Sbjct: 88 TPKNETSQNLNNNKKEKKK 106
>SB_54514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 364 CGPKIGELYQKWNKPIAGVAIGVACVEVVGALFA 465
C K+ +L Q+ +KP + +GV C E + A+ A
Sbjct: 81 CFIKVVQLVQQASKPQEAIFVGVGCFESMTAVLA 114
>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 115 GEEEDADHHLHNDDHQQKDCVRDDHAVTLA 26
G+++DAD NDD + D V DD + LA
Sbjct: 122 GDDDDADDDNGNDDEDKSD-VDDDDVIPLA 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,823
Number of Sequences: 59808
Number of extensions: 317701
Number of successful extensions: 1090
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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