Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00180
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    43   2e-04
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    32   0.27 
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    31   0.62 
Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z80217-2|CAB02288.1|  209|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = +2

Query: 2   FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVLFKKRSD 181
           FLGCCGAIRE++C+ V++A                 +   +S +  I + +     +  +
Sbjct: 68  FLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHE 127

Query: 182 ANADEAAEAVFSELQRQFECCGNT 253
           +   E+A   + +  + FECCG T
Sbjct: 128 SRGVESA---WDKTHQLFECCGVT 148



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 21/70 (30%), Positives = 37/70 (52%)
 Frame = +1

Query: 277 TLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVAIGVACVEVVGA 456
           T+P+SCC+++  +   A  N  +    PGC   + +   K    + G+   +A +++VG 
Sbjct: 158 TIPDSCCIEE--IEGCARENAPL--FEPGCIHSVEQWVLKNGAMVGGICAVLAAIQLVGV 213

Query: 457 LFALCLANSI 486
            FA CL+ SI
Sbjct: 214 CFACCLSKSI 223


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 235 ELSLQFRENSLGGLVCVSVRSLFE*HADAIHNALLDALAVGEEEDADHHLHN-DDHQQKD 59
           +L+L  +E SL  ++  SVR+  E H +      LD      +   DHH+HN ++H+  +
Sbjct: 53  DLTLNHKEESLYDMLVASVRAGRESHFELDQ---LDVHTETNQSGHDHHIHNNEEHKHHN 109

Query: 58  CVRDDH 41
               DH
Sbjct: 110 MRSHDH 115


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 18/82 (21%), Positives = 32/82 (39%)
 Frame = +2

Query: 2   FLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVLFKKRSD 181
           + GC GA + + C +  +                  F   E IK  +   +    + R  
Sbjct: 72  YFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTIRNRY- 130

Query: 182 ANADEAAEAVFSELQRQFECCG 247
            +++ A +  F  +Q +FECCG
Sbjct: 131 -SSETAFKDAFDTVQEKFECCG 151


>Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical
           protein T28F3.3 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 109 EEDADHHLHNDDHQQKDCVRDDH 41
           EE  DHH H+ DH  +  +R +H
Sbjct: 45  EELHDHHEHDHDHHDEQLIRKNH 67


>Z80217-2|CAB02288.1|  209|Caenorhabditis elegans Hypothetical
           protein F37B1.2 protein.
          Length = 209

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 363 AGIRGVDRAVVAGEGREDALLDATGLGQRELAVVDSAVLPQ 241
           AG+   D  +  G+G  + L D T +GQ  +  VD   +PQ
Sbjct: 25  AGVPFEDERLTFGDGSWEKLKDKTPMGQMPVLNVDGFEIPQ 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,550
Number of Sequences: 27780
Number of extensions: 226982
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)