Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00180
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17230.1 68414.m02099 leucine-rich repeat family protein / pr...    30   1.0  
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr...    27   7.1  
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr...    27   7.1  
At3g42780.1 68416.m04469 hypothetical protein hypothetical prote...    27   9.4  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   9.4  

>At1g17230.1 68414.m02099 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 1133

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +1

Query: 277 TLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAG----VAIGVACVE 444
           T+P++   ++   S FAGN+   ++    C P +     K N  I G      + + C+ 
Sbjct: 683 TVPDTAVFQRMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLINGSQRQKILTITCI- 741

Query: 445 VVGALFALCLANSIRNMDRRSP 510
           V+G++F +        + RR P
Sbjct: 742 VIGSVFLITFLGLCWTIKRREP 763


>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 268 GQFTLPESCCVKKSILSTFAGN 333
           G+   P S CV +S+L TFA N
Sbjct: 268 GEVAFPRSQCVMESVLYTFANN 289


>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 268 GQFTLPESCCVKKSILSTFAGN 333
           G+   P S CV +S+L TFA N
Sbjct: 268 GEVAFPRSQCVMESVLYTFANN 289


>At3g42780.1 68416.m04469 hypothetical protein hypothetical protein
           MZB10.16 - Arabidopsis thaliana, EMBL:AC009326
          Length = 176

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -2

Query: 522 QNISR*PSVHVSYGIGEAQREQGSYHLNTSNTDSNAGYRLVPFLVELADLGTAAGIRGVD 343
           Q I+R  ++H+  GI    R +    +  +   S   YR+VP  +   ++ TA  + G D
Sbjct: 76  QEIAR-MNIHLETGINSTLRRKKGIVIGVARAVSTEMYRIVPGNLTTEEMDTAKLVVGDD 134

Query: 342 RAVV 331
             ++
Sbjct: 135 GKII 138


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 160 HADAIHNALLDALAVGEEEDADHHLHNDDHQQKDCVRD-DH 41
           H    H+   D+    E  + DHH H+  H+ ++C  + DH
Sbjct: 577 HKHEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHDH 617


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,421,902
Number of Sequences: 28952
Number of extensions: 211940
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)