Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00179
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720...    28   3.3  
12_01_0933 - 9263023-9263146,9263224-9263416,9263495-9263634,926...    27   7.6  
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421...    27   7.6  

>09_04_0257 +
           16170914-16171113,16171362-16171554,16171929-16172034,
           16172293-16172415,16172739-16172830,16173276-16173376,
           16173458-16173524,16174016-16174108,16174247-16174375
          Length = 367

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 469 FFFFFLNYVQNILLIFNFTI*RLSLRKLWQTLTSNY 362
           FFFFFL ++ N L ++N     L +  ++Q L+ N+
Sbjct: 55  FFFFFLFHLSNSLKLYNLL--SLKILPIYQKLSGNH 88


>12_01_0933 -
           9263023-9263146,9263224-9263416,9263495-9263634,
           9263760-9263881,9263970-9264039,9264463-9264498,
           9264567-9264692,9265294-9265424,9265549-9265645,
           9265858-9266027,9267817-9267874,9268758-9269074
          Length = 527

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 273 FMAYVLRSFSYSFSRTEDLDRRARFDDAVTDVPAHF--FNFLEDLPPGL 133
           F+   L SFS SFSRT+++D    F   + D+ A     N  ED+  GL
Sbjct: 175 FLQETLASFSLSFSRTKEVD---SFTGRLLDIHAKMMKLNKKEDVRLGL 220


>03_06_0498 -
           34341441-34341575,34341808-34341945,34342019-34342117,
           34342320-34342400,34342548-34342610,34342717-34342764,
           34343033-34343410,34345413-34345537,34345635-34345701,
           34345797-34345856,34346495-34346621,34346670-34346986
          Length = 545

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 94  ALVLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVL 225
           A+++A+ M +  P PRW + + ++    ++ D   KA  A+  L
Sbjct: 259 AVIMAIGMWNLPPSPRWLLLRAVQGKA-SVEDNKKKAIQALRSL 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,846,586
Number of Sequences: 37544
Number of extensions: 168157
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)