Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00179
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    27   6.8  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    27   6.8  

>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 150  LQEN*KNGQEHP*RHRQSGPGDRGPRFG*SYRK 248
            L EN KN    P RH+Q+G  D+  + G S  K
Sbjct: 1065 LAENEKNAASPPTRHQQNGSKDKNEKPGCSSTK 1097


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 150  LQEN*KNGQEHP*RHRQSGPGDRGPRFG*SYRK 248
            L EN KN    P RH+Q+G  D+  + G S  K
Sbjct: 1065 LAENEKNAASPPTRHQQNGSKDKNEKPGCSSTK 1097


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,808,644
Number of Sequences: 27780
Number of extensions: 150409
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)