Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00179
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59520.3 68414.m06686 expressed protein (CW7)                       27   4.8  
At1g59520.1 68414.m06685 expressed protein (CW7)                       27   4.8  
At5g59190.1 68418.m07418 subtilase family protein contains simil...    27   8.5  

>At1g59520.3 68414.m06686 expressed protein (CW7)
          Length = 388

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 215 IAGPALTMPSRMFLPIFSIFLKIFHLGSGAALVMLKASTRAKTKDRIF 72
           + GP   M S+  + + SIF K   + S AA   + A+T +  +D +F
Sbjct: 310 VLGPVSPMSSKKSIDLGSIFRKAASVASVAAKHAIAAATASYDEDEMF 357


>At1g59520.1 68414.m06685 expressed protein (CW7)
          Length = 388

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 215 IAGPALTMPSRMFLPIFSIFLKIFHLGSGAALVMLKASTRAKTKDRIF 72
           + GP   M S+  + + SIF K   + S AA   + A+T +  +D +F
Sbjct: 310 VLGPVSPMSSKKSIDLGSIFRKAASVASVAAKHAIAAATASYDEDEMF 357


>At5g59190.1 68418.m07418 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 693

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 258 LRSFSYSFSRTEDLDRRARFDDAVTD 181
           + ++   F+R  D+D  A FDDA+ D
Sbjct: 195 IAAYKVCFNRCNDVDILAAFDDAIAD 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,072,067
Number of Sequences: 28952
Number of extensions: 135387
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)