Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00178
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   2.3  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   4.0  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   5.4  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   7.1  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   7.1  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   9.4  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   9.4  

>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +3

Query: 315 NGVNQDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSEN 446
           +GV+  LS +L S   A GC+ +++   NG+ SY+ + +V  EN
Sbjct: 41  SGVSCQLS-SLTSSNFASGCKISAMPILNGSMSYV-YTNVNLEN 82


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 31  QDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKC 159
           +DG+ Y  V   N+E++ +     + +  KW K DAR F+  C
Sbjct: 428 EDGKFY--VFSRNSENMSVRYPDISVSVSKWKKPDARSFILDC 468


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 43   VYLQVSLGNTEDLII---VGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSA 213
            VY ++SL + + L +   V   R  N+G +  +    FL  C +++ NEV K+  +   A
Sbjct: 1479 VYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFLIDCFMSLYNEV-KSSISPLDA 1537

Query: 214  DIPS 225
            +IP+
Sbjct: 1538 NIPN 1541


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
 Frame = -1

Query: 257 FLFPPKFIVSKLG--MSALGELDSA---LSTSLSTVREHLA---RNRRASNLCHLPSLYA 102
           FL+P   +  +    + + G +DSA   +  +   +R+HL    RNR+ +   H+P +Y+
Sbjct: 88  FLYPSLSVAKQSAAFLESKGPIDSAEVIIYDATKGLRKHLDSIDRNRKYTEEIHIPQVYS 147

Query: 101 RVVPT 87
            + P+
Sbjct: 148 VLFPS 152


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 417 LRFVDVTSENPQLTLKFKTAKPNGLLFVYVRGHRP 521
           LR  DV +++  + L  +   P+G LF Y+R H P
Sbjct: 66  LRLYDVWTDHQHMYLALEYV-PDGELFHYIRKHGP 99


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 231 HYELRREQKGILQVPDRGFDGCMRQISINGVNQD-LSENLESIGMAYGCQFASLVSFNG 404
           H+++ R+Q   ++   R ++G  +++S NG   D L+  L+ IG+    +  SL S  G
Sbjct: 309 HHDIERDQAKHVKKALRFYEGLTKRVSANGHAVDILAGCLDQIGI---MEMKSLASSTG 364


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 109 CMLGLCQLLSNPLCCLMTPASKPFHLASVMRRN 11
           C++G C   +N     + P  +  HL SV  +N
Sbjct: 237 CLIGACTSSTNATSDAVVPVREILHLPSVQMKN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,896
Number of Sequences: 5004
Number of extensions: 66274
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)