Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00178
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319... 29 3.2
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 29 4.2
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 29 4.2
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169... 29 4.2
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 29 4.2
11_06_0676 + 26152192-26152367,26152669-26152708,26152857-261529... 28 7.4
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298 28 7.4
11_01_0552 + 4366169-4366353,4366482-4366676,4367363-4367576 28 9.7
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857... 28 9.7
02_04_0474 - 23202739-23203011,23203103-23203469,23203592-232039... 28 9.7
>08_02_0800 +
21330446-21330722,21331040-21331182,21331925-21331978,
21332065-21332130,21333075-21333096,21333347-21333460,
21334153-21334278,21334891-21334925,21335709-21335809,
21335911-21335971,21336482-21336572,21337657-21337842,
21338755-21338922,21339006-21339208,21339313-21339431,
21339910-21339928,21340092-21340130,21340238-21340465,
21340987-21341088,21341842-21341889,21343622-21343765,
21343873-21343968,21344224-21344325,21345188-21345274
Length = 876
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 279 RGFDGCMRQISINGVNQDLSENLESIGMAYGCQFASLVSFN 401
RG DG RQ+++ VN S L + YG + SF+
Sbjct: 357 RGQDGAYRQLAVKCVNSTYSSRLPRYTLCYGSNELVMCSFS 397
>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 297 MRQISINGVNQDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSENPQ 452
+R++ + G+N++ E L S+ + +GC + L+ G D +D S P+
Sbjct: 1278 LRKLGVTGINKNNCEELCSVIVKHGCLQSLLLRAEGKDGLEGCLDGLSPPPK 1329
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 530 PDSISLSLVNGKLVVVSQREQLDTGLNTYNDSQWHVLTVTHNTSALKLVVDDFDYFSTDT 709
PD +S + N V+S R G+N +W VL +THN +L++ + + + T
Sbjct: 626 PDVLSQQVANKCDAVISIR-----GINVTVPVKWFVLALTHNEESLRIDAAESLFLNPKT 680
Query: 710 APPP 721
+ P
Sbjct: 681 SSLP 684
>06_03_0741 -
24016204-24016298,24016408-24016525,24016805-24016903,
24016992-24017117,24017200-24017277,24017366-24017554,
24018186-24018338,24018785-24018898,24019576-24019761,
24019845-24019970,24020053-24020248,24020338-24020438,
24020533-24020610,24020707-24020952,24021063-24022253
Length = 1031
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -1
Query: 302 PHTTVEASIRHLQYSFLFPPKFIVSKLGMSALGELDSALSTSLSTVREHLARNRRASNLC 123
PH A+ + +Y L P + I G+S AL ++ T +H+ R++ SN+C
Sbjct: 341 PHAAFLATSQ--EYKRLMPGRII----GVSVDSSGKPALRMAMQTREQHIRRDKATSNIC 394
Query: 122 HLPSLYARV 96
+L A +
Sbjct: 395 TAQALLANM 403
>01_06_0461 +
29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -1
Query: 302 PHTTVEASIRHLQYSFLFPPKFIVSKLGMSALGELDSALSTSLSTVREHLARNRRASNLC 123
PH A+ + +Y L P + I G+S AL ++ T +H+ R++ SN+C
Sbjct: 343 PHAAFLATSQ--EYKRLMPGRII----GVSVDSSGKPALRMAMQTREQHIRRDKATSNIC 396
Query: 122 HLPSLYARV 96
+L A +
Sbjct: 397 TAQALLANM 405
>11_06_0676 +
26152192-26152367,26152669-26152708,26152857-26152966,
26153886-26153934,26154157-26154206,26154606-26155150,
26155583-26155743,26156231-26156440,26156525-26156690,
26156765-26156869,26157465-26157760
Length = 635
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 300 RQISINGVNQDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSENPQLTLKFK 470
+Q ++N + + + L+SIG + + V D+Y+ F+D P L + F+
Sbjct: 446 QQDAVNRLKKQAYDELDSIGFDHEMKNNYPVMTLSDDAYIPFIDTAQNPPDLHVTFQ 502
>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
Length = 439
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 92 AQPEHTMMVNGINWTLAGSLPSAL*PWTTRCSKRSPIRPAPTY 220
+QP H WTL GSL + +TR R P+R P +
Sbjct: 54 SQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPRPPVRRPPVH 96
>11_01_0552 + 4366169-4366353,4366482-4366676,4367363-4367576
Length = 197
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 557 NGKLVVVSQREQLDTGLNTYNDSQWHV-LTVTHNTSAL 667
NGKL+V +E +D QW V +TV+ N A+
Sbjct: 144 NGKLIVRDDKETVDEIKGVVRSLQWEVRMTVSKNREAM 181
>05_04_0356 -
20584212-20584628,20584798-20584899,20585658-20585705,
20586046-20586186,20586315-20586437,20587166-20587252,
20587630-20587742,20587844-20587943,20588217-20588601,
20588841-20588917,20589501-20589593,20589697-20589774,
20590923-20591246
Length = 695
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 282 GFDGCMRQISINGVNQDLSENLESIGMAYGCQFASL 389
G G ++I+ NG NQDLS+N+ QF+ L
Sbjct: 272 GHLGLQQKITSNGANQDLSKNMHHKEKYNAGQFSGL 307
>02_04_0474 -
23202739-23203011,23203103-23203469,23203592-23203990,
23204060-23204397,23204558-23204782,23205025-23205073,
23205281-23205462
Length = 610
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 4 GGYFFSLLMQDGRVYLQVSLGNTEDL 81
GGYF + L ++G+VY +S G TE L
Sbjct: 331 GGYFSAFLSREGQVY-TISWGRTERL 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,089,854
Number of Sequences: 37544
Number of extensions: 469392
Number of successful extensions: 1294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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