Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00178
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.021
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 35 0.086
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.80
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 31 1.1
SB_12620| Best HMM Match : SecG (HMM E-Value=2.3) 31 1.1
SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 31 1.4
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25) 29 3.2
SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06) 29 3.2
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 29 5.7
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 7.5
SB_1359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 28 9.9
SB_7492| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0025) 28 9.9
SB_47548| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 584 REQLDTGLNTYNDSQWHVLTVTHNTSALKLVVDDFDYFSTDTAPPPL-HI-LDGVLFIGG 757
+ ++ G + +N +WH ++V N L VDD +T P P H+ LDG++FIGG
Sbjct: 85 KTEIQLGKDLFN-GKWHTVSVNRNGRLTMLSVDDLS--TTKITPGPYDHLNLDGLIFIGG 141
Query: 758 V 760
+
Sbjct: 142 L 142
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 36.7 bits (81), Expect = 0.021
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +1
Query: 1 EGGYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNE 180
E G F + + +G++ L++++G+ +++D KWHKL RR L + ++VDN
Sbjct: 570 EAGQFMDIFLVNGKLRLRMAIGSCSYAERT-VNGSFSDLKWHKLVIRRELEETVVSVDN- 627
Query: 181 VLKAESNSPSADIPSLDTMNFG 246
+ E SA + + M G
Sbjct: 628 -ITTEPIKCSAQLSKMVAMYAG 648
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 34.7 bits (76), Expect = 0.086
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +3
Query: 270 VPDRGFDGCMRQISINGVNQDLSENLESIGMAYGCQFASLVSFNGTDSY 416
+P GF GC+R I N DL L+ + GCQ AS D Y
Sbjct: 1199 IPYTGFKGCVRNIKDNHNLYDLKNPLKVVNAPEGCQLASACPECKNDGY 1247
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 13 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVD 174
F +++++ GRV L VSLG + + +DG+WH + R + + +D
Sbjct: 1090 FIAVVLRGGRVELFVSLGLDPVTVKMDKGPRLDDGEWHTVQVLRNMKDIEIIID 1143
>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 774
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 13 FFSLLMQDGRVYLQVSLGNTE-DLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLK 189
F ++ + +G+V + GN+ DL G YNDGKWH + + + +VD EV K
Sbjct: 488 FLTIGLLNGKVRFRCDSGNSPLDLETSGVQ--YNDGKWHHVHLDKNGLDITFSVDQEVKK 545
>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 7 GYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVL 186
GY + + + V G + T +Y+DG+W+ L R LA +LTV
Sbjct: 958 GYIYGVYLNMSGVTFYFKSGAQSYALSTNKT-SYSDGRWYNLRLTRGLANATLTVTPVNS 1016
Query: 187 KAESNSPSADIPS 225
+ +S S ++PS
Sbjct: 1017 QGVIDSVSINLPS 1029
Score = 31.9 bits (69), Expect = 0.61
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Frame = +3
Query: 285 FDGCMRQISINGVNQDLSEN--------LESI-GMAYGCQFASLVSFNGTDSYLRFVDVT 437
F GCM+ +SI N+ + N L S+ + SFNG L + D T
Sbjct: 1421 FIGCMKTMSIQSSNETETLNPRTERDISLSSVTNQTCYSTIQAQASFNGEGQILLYNDFT 1480
Query: 438 SENP-QLTLKFKTAKPNGLLFV 500
+ ++LKF+T K +GLL V
Sbjct: 1481 LPSTFDMSLKFRTVKRSGLLLV 1502
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 31.5 bits (68), Expect = 0.80
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 13 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVD 174
F +L + + ++ +LG T ++ + RA DGKWH + R K L VD
Sbjct: 3865 FIALEIVERYLWFSYNLGYTGIPEVIKSDRAVTDGKWHHVTVIRDKKKGELLVD 3918
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +3
Query: 315 NGVNQDLSENLESI----GMAYGCQFASLVSFNGTDSYLRFVDVTSENPQ----LTLKFK 470
N +DL + E + G C+ +S F SY+ F + N + +T++F
Sbjct: 3786 NSTCKDLPTSFECVCDFGGRGERCEISSF-GFEPA-SYMLFPTLQGVNQKTYNNITMEFS 3843
Query: 471 TAKPNGLLFVYVRG 512
T+ PNGLLF G
Sbjct: 3844 TSSPNGLLFYNTDG 3857
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 13 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKA 192
F + + G + +Q+ +G + +G +D +WH+ + +R LT+D E LK
Sbjct: 295 FLLVELHRGVLVMQLDIGAGMLKLSIG--EKLSDARWHRAEIKRARRNVKLTLD-ERLKV 351
Query: 193 ESNSPSADIPSLDTMNF-GGNKKEY 264
+ P PSL N GG + Y
Sbjct: 352 DGTCP----PSLTAFNMQGGEGRVY 372
>SB_12620| Best HMM Match : SecG (HMM E-Value=2.3)
Length = 172
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 617 NDSQWHVLTVT-HNTSALKLVVDDFDYFSTDTAPPPLHILDG 739
ND+ WH + VT N + L D + F++ T P H++ G
Sbjct: 8 NDNHWHYIVVTWSNDAPWSLFKDGVNVFTSSTVLRPGHVIPG 49
>SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 138 SPVPCQVLSDRGQRGAQSGVQFAQRRHTELRHYELR-REQKGILQVPDRGFDGCMRQISI 314
+PV C L R + +SG QRRH ++RH + + VP GF G + S
Sbjct: 270 APVTCSSLLSRDRSSRRSGSARIQRRHGDMRHSRNNSADMMDVQSVP--GFHGKLMPASS 327
Query: 315 NGV 323
+ V
Sbjct: 328 DSV 330
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 390 VSFNGTDSYLRFVDVTSENP--QLTLKFKTAKPNGLLF 497
+ +G D Y+RF ++ LTL FKT PNGLLF
Sbjct: 30 LKLSGQD-YVRFEPTATKKTANNLTLSFKTIHPNGLLF 66
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 13 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDA 138
F ++ + G+V VS G T NDG+WH L A
Sbjct: 1483 FIAIELSGGQVRFTVSTGGTPASATSRVDGGLNDGRWHSLTA 1524
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 578 SQREQLDTGLNTYNDSQWHVLTVTHNTSALKLVVDD 685
S ++D GLN D +WH LT + +++DD
Sbjct: 1505 SATSRVDGGLN---DGRWHSLTAVYKNKTAIVIIDD 1537
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 611 TYNDSQWHVLTVTHNTSALKLVVDDFDYFSTDTAPPPLHILDGV-LFIGGV 760
T++D+QWH L +T S L VD S ++ I G ++IGG+
Sbjct: 1414 TFDDNQWHRLQLTRKDSVGTLTVDGIYTASGSSSGASTFISMGTGVYIGGL 1464
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +1
Query: 19 SLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKAES 198
++++++G+ + V ++D +WH+L R + +LTVD + S
Sbjct: 1386 AVVLREGKPWFIFDCQTGPAAFTVSAAVTFDDNQWHRLQLTRKDSVGTLTVDGIYTASGS 1445
Query: 199 NSPSADIPSLDT-MNFGGNKKEYCKCRIEASTVV*GR 306
+S ++ S+ T + GG ++ R + GR
Sbjct: 1446 SSGASTFISMGTGVYIGGLPTDFIITRSDPPAARVGR 1482
>SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)
Length = 614
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +1
Query: 37 GRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSAD 216
G+V+ LG + R +DG+WH + R +++VDN K ++++ D
Sbjct: 493 GKVFYDSDLGTGRSKVYAEGIRV-DDGEWHSVVITREKKTLAISVDNGRAKGQTDT-RGD 550
Query: 217 IPSLDTMNFGG 249
+D N G
Sbjct: 551 FNKIDLPNSVG 561
>SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)
Length = 530
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +2
Query: 491 PIRLRQRTQTAIMPDSISLSLVNGKLVVVSQREQLDTGLNTYNDSQWHVLTVTHNTSALK 670
P + RTQT + + I+ +NG V+ +Q + T D+ + ++ N +
Sbjct: 126 PDGIPARTQTLVTEEEITRKTINGDQVIQTQIYNIPDHKMTTEDANGNTMSYVFNEDGIP 185
Query: 671 LVVDD 685
L V D
Sbjct: 186 LNVTD 190
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = +2
Query: 533 DSISLSLVNGKLVVVSQ----REQLDTGLNTYNDSQWHVLTVTHNTSALKLVVDDFDYFS 700
D I++ L++G L V RE + T +D WH + + A L VDD
Sbjct: 775 DHITIGLIDGILEVRYDLGVGRETVIRSTATLDDGYWHSVKFVRKSLAAYLKVDDEIKAG 834
Query: 701 TDTAPPPLHILDGVLFIGG 757
+ + VLFIGG
Sbjct: 835 IASDSQYRQLNSDVLFIGG 853
>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 28 MQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVD 174
M G V L++ LG E L++ ND +WH ++ +R L +D
Sbjct: 301 MISGNVVLKMDLGKGE-LVLSAGDGLLNDNRWHWVEIKRRGRHAKLVLD 348
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 37 GRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSAD 216
G+V L LG+ +I T NDG WH + R + L+VD+ ++ + +
Sbjct: 1562 GKVRLTADLGSGPGSVINPMT--VNDGDWHHITWSRQYKRLILSVDDVTMEMSTQGEQSV 1619
Query: 217 IPSLDT 234
+ D+
Sbjct: 1620 LDVADS 1625
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +1
Query: 7 GYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVL 186
G F S+ + G V + LG ++ + + G+WH + A R+ SL +D+E
Sbjct: 299 GDFVSIAIVGGNVEFRYDLGYGR--AVIRSKKNITVGQWHTVVAERYRRDGSLILDSEP- 355
Query: 187 KAESNSPSADI 219
+S +P +
Sbjct: 356 AVKSQAPCCSV 366
>SB_1359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 306 ISINGVNQDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSE 443
+ + G ++ L+ N + Y Q S++S +G D ++RF D+ +E
Sbjct: 89 LDVRGRSKTLTYN--GVRTTYAEQLGSVLSLDGVDDFIRFRDMGNE 132
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 398 QRY*QLPSLRRRDQREPAADPQVQDRKT*RTPIRLRQRTQT 520
+RY S RRR R + P+ + R R+P R+R R+++
Sbjct: 307 RRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPYRIRYRSRS 347
>SB_7492| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0025)
Length = 87
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 112 DGKWHKLDARRFLAKCSLTVD-NEVLKAESNSPSADIPSLDTMNFGG 249
DGKWH+++ + S+ VD N+ ++ +S + D + GG
Sbjct: 26 DGKWHRVNLNKIRNTASIQVDGNDPVEVKSPGSLGNTNLYDPLYVGG 72
>SB_47548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 312 INGVNQDLSENLESIGMAYGCQFASLVSFNGTDSYLRFV-DVTSEN 446
I+GV+ + + E+ G S+ F G +++LRFV DVT E+
Sbjct: 85 IHGVSGTVQQWKEAAGKKNRRTLPSVSQFEGLEAFLRFVKDVTEES 130
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +1
Query: 661 RPQTSSRRLRLLQYGHRAATAPHT*RGSLHRRRAR 765
RP+ +RR RL HR T HT R LH RR R
Sbjct: 161 RPRLHTRRPRL----HRRRTRLHTRRPRLHTRRPR 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,112,671
Number of Sequences: 59808
Number of extensions: 521365
Number of successful extensions: 1457
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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