Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00178
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.5  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   7.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 109 NDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSADI-PSLDTM 237
           NDGKWH + + +      L +   +++  ++S + +   S+DT+
Sbjct: 346 NDGKWHNIYSEK-----GLNILGNIIEGNADSYNTEFYGSIDTL 384


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 109 NDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSADI-PSLDTM 237
           NDGKWH + + +      L +   +++  ++S + +   S+DT+
Sbjct: 346 NDGKWHNIYSEK-----GLNILGNIIEGNADSYNTEFYGSIDTL 384


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 291 GCMRQISINGVNQDLSENLESIGMAYGCQFASLVSFNGTDSYL--RFVDVTSENPQLTLK 464
           GC   ++ NG   DL +NL+ + +  G Q+  ++S N        + V V S+     ++
Sbjct: 418 GCSGFVAFNGDQYDLKKNLK-VCLPPG-QYCDVISGNLEKGRCTGKIVTVGSDG-NANIE 474

Query: 465 FKTAKPNGLLFVYVR 509
               + +G+L ++V+
Sbjct: 475 IGAGEEDGVLAIHVK 489


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 175 NEVLKAESNSPSADIPSLDTMNFGGN 252
           NE+ + + NSP  D+  L  ++   N
Sbjct: 222 NEITRLQENSPLLDLRQLQELHLQRN 247


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 303 ASYNRRSLDPALAVFLFVPSEVHSV*ARYVGAGRI 199
           AS++ RS+D    + L     VH   A+  G G I
Sbjct: 277 ASFSHRSIDVKDGIVLATGITVHRNSAQQAGVGTI 311


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 303 ASYNRRSLDPALAVFLFVPSEVHSV*ARYVGAGRI 199
           AS++ RS+D    + L     VH   A+  G G I
Sbjct: 277 ASFSHRSIDVKDGIVLATGITVHRNSAQQAGVGTI 311


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 777 HHVSPCTPPMKRTPSS 730
           HH+SP  P M  T SS
Sbjct: 12  HHLSPNMPTMDSTVSS 27


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 638 TRATVSRYTCSIQCRVVPFDSQ 573
           T   + + +C I  R  PFD Q
Sbjct: 136 TPPAIFKSSCEIDVRYFPFDQQ 157


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 327 QDLSENLESIGMAYGCQFASLVSFNGTD 410
           +  +EN +   +  GC    ++S++ TD
Sbjct: 259 EQFAENEDLEELCRGCNLGHMISYDDTD 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,591
Number of Sequences: 438
Number of extensions: 4719
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)