Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00178
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (...    31   1.2  
At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containi...    30   1.5  
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    29   4.6  
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)...    29   4.6  
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)...    29   4.6  
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)...    29   4.6  
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)...    29   4.6  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    29   4.6  
At1g66370.1 68414.m07538 myb family transcription factor (MYB113...    29   4.6  
At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1) id...    28   6.1  
At4g26930.1 68417.m03875 myb family transcription factor (MYB97)...    28   8.1  
At3g58050.1 68416.m06471 expressed protein                             28   8.1  
At1g56650.1 68414.m06515 myb family transcription factor (MYB75)...    28   8.1  

>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
           (ALDH3) nearly identical to mitochondrial aldehyde
           dehydrogenase ALDH3 [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
           aldehyde dehydrogenase (NAD) family protein
          Length = 534

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 4   GGYFFSLLMQDGRVYLQVSLGNTEDL--IIVGTTRAYNDGKWHKLDA 138
           G  F +L  ++G V  QVS G+ ED+   +    +A+++G W K+ A
Sbjct: 68  GKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTA 114


>At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 643

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 416 VAVSTVERYQRSELASIRHADRF*ILTEILVYSVDADLPHTTVEASIRHLQYSFLFPPKF 237
           +++S    Y R  L      D F   T +  YS ++D PH +V   +  ++  F+FP  F
Sbjct: 49  ISISDALPYARRLLLCFPEPDAFMFNTLVRGYS-ESDEPHNSVAVFVEMMRKGFVFPDSF 107


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -1

Query: 302 PHTTVEASIRHLQYSFLFPPKFIVSKLGMSALGELDSALSTSLSTVREHLARNRRASNLC 123
           PH    A+ +  +Y  + P + I    G+S       AL  ++ T  +H+ R++  SN+C
Sbjct: 349 PHAAFLATSQ--EYKRMMPGRII----GISVDSSGKQALRMAMQTREQHIRRDKATSNIC 402

Query: 122 HLPSLYARV 96
              +L A +
Sbjct: 403 TAQALLANM 411


>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
           identical to zinc finger and C2 domain protein
           GI:9957238 from [Arabidopsis thaliana]
          Length = 337

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 566 LVVVSQREQLDTGLNTYNDSQWH---VLTVTHNTSALKLVVDDFDYFSTD 706
           ++ + Q++   T + +  +  W+   +L+V HN  ++KL V D+D FS D
Sbjct: 206 VLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSAD 255


>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
           identical to zinc finger and C2 domain protein
           GI:9957238 from [Arabidopsis thaliana]
          Length = 337

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 566 LVVVSQREQLDTGLNTYNDSQWH---VLTVTHNTSALKLVVDDFDYFSTD 706
           ++ + Q++   T + +  +  W+   +L+V HN  ++KL V D+D FS D
Sbjct: 206 VLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSAD 255


>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
           identical to zinc finger and C2 domain protein
           GI:9957238 from [Arabidopsis thaliana]
          Length = 337

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 566 LVVVSQREQLDTGLNTYNDSQWH---VLTVTHNTSALKLVVDDFDYFSTD 706
           ++ + Q++   T + +  +  W+   +L+V HN  ++KL V D+D FS D
Sbjct: 206 VLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSAD 255


>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
           identical to zinc finger and C2 domain protein
           GI:9957238 from [Arabidopsis thaliana]
          Length = 337

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 566 LVVVSQREQLDTGLNTYNDSQWH---VLTVTHNTSALKLVVDDFDYFSTD 706
           ++ + Q++   T + +  +  W+   +L+V HN  ++KL V D+D FS D
Sbjct: 206 VLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSAD 255


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -1

Query: 302 PHTTVEASIRHLQYSFLFPPKFIVSKLGMSALGELDSALSTSLSTVREHLARNRRASNLC 123
           PH    A+ +  +Y  + P + I    G+S       AL  ++ T  +H+ R++  SN+C
Sbjct: 355 PHAAFLATSQ--EYKRMMPGRII----GVSVDSSGKQALRMAMQTREQHIRRDKATSNIC 408

Query: 122 HLPSLYARV 96
              +L A +
Sbjct: 409 TAQALLANM 417


>At1g66370.1 68414.m07538 myb family transcription factor (MYB113)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 246

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 73  EDLIIVGTTRAYNDGKWHKLDARRFLAKC 159
           ED+++      Y +GKWH++  R  L +C
Sbjct: 17  EDILLRQCIDKYGEGKWHRVPLRTGLNRC 45


>At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1)
           identical to chorismate mutase GB:Z26519 [SP|P42738]
           [Arabidopsis thaliana]
          Length = 340

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 358 PIDSRFSLRSWFTPLMLIC-LIQPSKPRSGTCSI 260
           PI +   L S  +   + C L QPSKPRSGT S+
Sbjct: 31  PISTLLPLPSTKSSFSVRCSLPQPSKPRSGTSSV 64


>At4g26930.1 68417.m03875 myb family transcription factor (MYB97)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain ;similar to anther-specific myb-related protein 2
           GI:11066263 from [Nicotiana tabacum]
          Length = 389

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  EDLIIVGTTRAYNDGKWHKLDARRFLAKC 159
           ED  +    R Y +G W+ +  + +LA+C
Sbjct: 28  EDETLAAYVREYGEGNWNSVQKKTWLARC 56


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 207 QRRHTELRHYELRREQK---GILQVPDRGFDGCMRQISIN 317
           +RR+++   +  R E +     L+VP RGF+G  RQ+ +N
Sbjct: 692 KRRYSDNASFVSRSEARYRNDRLEVPSRGFNGSNRQLRVN 731


>At1g56650.1 68414.m06515 myb family transcription factor (MYB75)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA putative transcription factor
           (MYB75) GI:3941507
          Length = 248

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  EDLIIVGTTRAYNDGKWHKLDARRFLAKC 159
           ED ++      Y +GKWH++  R  L +C
Sbjct: 17  EDSLLRQCINKYGEGKWHQVPVRAGLNRC 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,033
Number of Sequences: 28952
Number of extensions: 351320
Number of successful extensions: 925
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)