Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00177
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    65   9e-12
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    29   0.97 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   5.2  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   5.2  
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces...    26   5.2  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   5.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   6.8  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   9.0  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 65.3 bits (152), Expect = 9e-12
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
 Frame = +3

Query: 249 SGFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLA-NNIGKDHLHGGINGFN 425
           +GF++   Y  +  P+ G T+GR ANRI   +F +DG  Y L  N   K  LHGG NGF+
Sbjct: 401 NGFNDFSRYKLKENPFFGATIGRFANRIANGQFEVDGHLYTLCKNENNKTTLHGGNNGFD 460

Query: 426 KANWNSTV-----DGTKVIFSYLSKDGEEGYP 506
           K  +   +     D   + F  + KDG  G+P
Sbjct: 461 KQFFLGPIARQYEDYNTLEFILVDKDGNNGFP 492


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -1

Query: 478 R*LNITLVPSTVEFQFALLNPLIPPCK*SFPMLLAS**VVPSMLNFAPPILLAQRPTVVP 299
           R LNI+++PS V     L+N L  P    +  ++AS   VP +LN  P +  +Q   ++P
Sbjct: 362 RILNISVIPSDVHSPPKLINYLTSPDTVIWSAVIAS-CAVPGILNPIPLMTRSQSHRLIP 420


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 343 FAPPILLAQRPTVVPKYGVFLFTYPSS 263
           F PP+   Q P  +P + ++L ++PS+
Sbjct: 464 FVPPVRTNQIPRQIPSHSIWLSSFPSA 490


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 685 SVYNKDMVVDLLDTSFVASQIKIRMVCQIYN 593
           +VYN + V +LL  + +A Q+ + +VC  Y+
Sbjct: 749 NVYNPEKVKNLLKEAKLADQLPLILVCDRYD 779


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 538 NFISNVSNKIPGYPSSPSFDR*LNITLVPSTVEFQFALLNPLIPP 404
           N + N  +K PG     + D  L I+L+P T+E + AL N L+ P
Sbjct: 529 NAVINGPHKWPGASHIQNEDGTL-ISLMPLTIEQRTALANQLLTP 572


>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 72

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 55  RLNHSF*IINMVTLNVE 105
           RLNHS  +INM  +NVE
Sbjct: 29  RLNHSLQLINMSNMNVE 45


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 127 ETVSKFTWRASDGFSVSVISYGAT 198
           E +S+    A DG++VS+ +YG T
Sbjct: 554 EEISQLIQSAIDGYNVSIFAYGQT 577


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 388  PMLLAS**VVPSMLNFAPPILLAQRPTVVPKYGVFLFTYPSSSSNPEQRH 239
            P L+A      S +  +   LL+    V P+  V+  T  S S+NP+Q+H
Sbjct: 1739 PQLIARIHTSSSSVRASVHQLLSDIGRVHPQALVYSLTVSSKSTNPQQKH 1788


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 562 DMQGIVLGNFISNVSNKIPGY 500
           D++ IVLG ++ +   K PGY
Sbjct: 283 DLKDIVLGQYVKSKDGKKPGY 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,860
Number of Sequences: 5004
Number of extensions: 72393
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)