Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00177
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 81 1e-15
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 80 2e-15
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 78 9e-15
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 75 8e-14
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 64 1e-10
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 56 3e-08
07_03_0722 + 20946201-20947327,20949531-20950791 30 2.3
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 3.1
09_04_0430 + 17502387-17503505 29 5.4
05_03_0471 - 14455543-14455650,14455925-14456002,14456121-144562... 28 7.1
11_01_0758 + 6362500-6363233,6363709-6365500 28 9.4
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953 28 9.4
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Frame = +3
Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKA 431
G+D + YVN T Y G +GR ANRI A+F++DG TY+L N G + LHGG GF+K
Sbjct: 75 GYDTVAEYVN-GTAYFGGLIGRVANRIANARFTLDGKTYRLFRNDGNNSLHGGHRGFSKV 133
Query: 432 NWN-----STVDGTKVIFSYLSKDGEEGYPG 509
W + D ++ Y S DGE+G+PG
Sbjct: 134 IWTVKEHVAGGDSPRITLYYHSFDGEQGFPG 164
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 503 PGDLITNITYEVTEDNALHVDF-MSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVI 679
PGDL +TYE+ L V + H+Y+NLAG +G + I
Sbjct: 163 PGDLDVFVTYELPRPYVLAVRMNATARGKATPVNLAHHAYWNLAGEGSGAASVLAETVRI 222
Query: 680 NADKITETDSGS-IPTGGFISVGGTPYD 760
+A + T D+ + IPTG V GTPYD
Sbjct: 223 HASRYTPVDAATLIPTGRVAPVAGTPYD 250
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 166 FSVSVISYGATIQSIQVPDKYGITSDVVLG 255
FS+ V ++GATI S+ +PD G +DVVLG
Sbjct: 46 FSIRVTNWGATIMSVILPDSKGNLADVVLG 75
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 80.2 bits (189), Expect = 2e-15
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Frame = +3
Query: 288 TPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWN---STVDGT 458
+PY G VGR ANRI KF+++G Y LA N G + LHGG+ GF+K W+ +
Sbjct: 65 SPYFGCIVGRVANRIKEGKFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERKSECP 124
Query: 459 KVIFSYLSKDGEEGYPG 509
+ F Y SKDGEEGYPG
Sbjct: 125 SITFQYHSKDGEEGYPG 141
Score = 54.8 bits (126), Expect = 7e-08
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 503 PGDLITNITYEVTEDNALHVDFMSXXXXXXXXXXXX-HSYFNLAGHETGVQEIYNHIFVI 679
PGD+ TY + + L +D + H+Y+NLAGH +G + +H I
Sbjct: 140 PGDVTVRATYSLPDSTTLRLDMEAVAENKATPINLAQHTYWNLAGHNSG--DTLDHSIQI 197
Query: 680 NADKITETDSGSIPTGGFISVGGTPYDLAS 769
IT D +IPTG + V GTP+D +
Sbjct: 198 WGKHITPVDENTIPTGEIMPVKGTPFDFTT 227
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 169 SVSVISYGATIQSIQVPDKYGITSDVVLG 255
+ + ++GATI S+ VPD +G +DVVLG
Sbjct: 15 TAKIAAWGATITSLIVPDAHGNLADVVLG 43
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 77.8 bits (183), Expect = 9e-15
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Frame = +3
Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKA 431
G+ ++ YVN +T Y G VGR ANRI G +F++ G + N GK+ LHGG GFN+
Sbjct: 13 GYKDIGSYVN-DTTYFGALVGRVANRIAGGRFTVKGHAFHTYKNDGKNTLHGGHRGFNQV 71
Query: 432 NWN----STVDGTKVIFSYLSKDGEEGYPG 509
W+ +T + F Y S DGE+G+PG
Sbjct: 72 FWSVRERATGHFPYITFYYRSYDGEQGFPG 101
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +2
Query: 503 PGDLITNITYEVTEDNALHVDFMSXXXXXXXXXXXX---HSYFNLAGHETGVQEIYNHIF 673
PG L +TY++ D + V + H+Y+NL GH G I +H
Sbjct: 100 PGALDVLVTYKIDGDYSFSVTMYARPVDDGKPTPVNLAQHTYWNLRGHGNGT--ILDHSV 157
Query: 674 VINADKITETDSGSIPTGGFISVGGTPYD 760
I A +T +G IPTG V GTP+D
Sbjct: 158 QIFASAVTPVGAGLIPTGAVSPVSGTPFD 186
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 74.5 bits (175), Expect = 8e-14
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Frame = +3
Query: 270 GYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTV 449
G N +PY G VGR ANRI KF+++ Y LA N + LHGG GF+K W
Sbjct: 198 GVPNGTSPYFGCIVGRVANRIKDGKFTLNDKQYSLAINNPPNTLHGGFKGFDKIIWEVAE 257
Query: 450 ----DGTKVIFSYLSKDGEEGYPG 509
+ + F Y SKDGEEG+PG
Sbjct: 258 YVKGENPSITFKYYSKDGEEGFPG 281
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 503 PGDLITNITYEVTEDNALHVDFMSXXXXXXXXXXXX-HSYFNLAGHETGVQEIYNHIFVI 679
PGD+ Y + L ++ + H+Y+NLAGH +G ++ H I
Sbjct: 280 PGDVSVTARYSILASTTLKLEMEAIPLNKATPISLAQHTYWNLAGHNSG--DVLAHTVQI 337
Query: 680 NADKITETDSGSIPTGGFISVGGTPYD 760
+IT D SIPTG + V G+P++
Sbjct: 338 LGSQITPVDETSIPTGEMMPVSGSPFN 364
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 178 VISYGATIQSIQVPDKYGITSDVVLG 255
+ + GAT+ S+ VPD G+ DVVLG
Sbjct: 122 ITNVGATVTSLLVPDNNGVLGDVVLG 147
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 64.1 bits (149), Expect = 1e-10
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = +3
Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKA 431
G D + YVN +T Y G GR RI +F +DG Y N G++ +HGG GF+K
Sbjct: 71 GLDTIAEYVN-DTNYFGPVTGRVGQRIARGRFVLDGKVYHTYINDGRNAIHGGHRGFSKV 129
Query: 432 NWN-----STVDGTKVIFSYLSKDGEEGYPG 509
W D + Y S DGE+G+PG
Sbjct: 130 IWTVKEYVGGGDSPYITLYYRSFDGEQGFPG 160
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 127 ETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGL 258
+TV ++ R D FSV + ++GAT+ S+ +PD G +DVVLGL
Sbjct: 30 KTVGEYVLRKGD-FSVKITNWGATMMSVVLPDSKGNLADVVLGL 72
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +3
Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGF 422
G+D + YVN +T Y G VGR ANRI A+F +DG Y L N GK+ LHG + F
Sbjct: 74 GYDTIAEYVNSST-YFGALVGRVANRIAKARFVLDGKAYHLYPNDGKNTLHGILEKF 129
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 503 PGDLITNITYEVTEDNALHVDF-MSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVI 679
PG L +TY+++ L V + HSY+NL G TG +I + +
Sbjct: 183 PGALDVYVTYQLSGPYVLSVHMNATAAGKATPVNLAQHSYWNLGG--TGSGDILGNTVQL 240
Query: 680 NADKITETDSGSIPTGGFISVGGTPYDL 763
A + T D+ IPTG V GTP DL
Sbjct: 241 FASRYTPVDAELIPTGQVAPVTGTPCDL 268
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1
Query: 106 DFGQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLG 255
D + TV + R D FS+ V ++GA I S+ +PD G DVVLG
Sbjct: 26 DAAERKATTVGVYELRKGD-FSIRVTNWGAVIMSVVLPDSRGKLDDVVLG 74
>07_03_0722 + 20946201-20947327,20949531-20950791
Length = 795
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -1
Query: 670 DMVVDLLDTSFVASQIKIRMVCQIYNGLFSCRRHKVDMQGIVLGNFISNVSNK 512
D+VV++L V S + + VC+ + L + R H+ + + G F ++S +
Sbjct: 436 DLVVEILRRLPVRSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSISGE 488
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 670 DMVVDLLDTSFVASQIKIRMVCQIYNGLFSCRRHKVDMQGIVLGNFISNVSNK 512
D+VV++L V S + + VC+ + L + R H+ + + G F + S +
Sbjct: 18 DLVVEILRRLPVRSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSSSGE 70
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 76 IINMVTLNVEDFGQHHGETVSKFTWR 153
I ++VTL D QHHG++ KFT R
Sbjct: 82 IRSLVTLAFADLLQHHGQSARKFTTR 107
>09_04_0430 + 17502387-17503505
Length = 372
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Frame = +3
Query: 246 CSGFDEL-----DGYVNRNTPYLGTTVGRCANRIGGAK 344
C GF++L G NTP+LGTT G A+ + GA+
Sbjct: 293 CPGFEKLISSQQHGTDQPNTPWLGTTGGAEADGVAGAE 330
>05_03_0471 -
14455543-14455650,14455925-14456002,14456121-14456285,
14457151-14457261,14457863-14458024,14458462-14458538,
14459526-14460177
Length = 450
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 744 PTLIKPPVGIDP--ESVSVILSAFITKIWL*ISW-TPVSWPAKLKY 616
P + PP I P ++ +I+ AF+TK L I W WP Y
Sbjct: 277 PLFMLPPKEIPPFWHAIFIIMLAFLTKCHLQIQWFARQQWPLSACY 322
>11_01_0758 + 6362500-6363233,6363709-6365500
Length = 841
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = -1
Query: 757 VGRSSYAYKTTSRNRSRIRLRDLVSVYNKDMVVDLLDTSFVASQIKIRM---VCQIYNGL 587
VG+S++A K + + R V K + +L + + SQ++ R VC+++N L
Sbjct: 177 VGKSTFAQKLWRKLGGQFDCRAFVHTAKKPDMRRILRS--ILSQVRPRQQPEVCEVHNLL 234
Query: 586 FSCRRHKVDMQGIVL 542
R+H +D + ++
Sbjct: 235 EDLRKHLLDKRYFII 249
>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
Length = 946
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +3
Query: 279 NRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGT 458
N NTP G T G A + Q A + L G GF K DGT
Sbjct: 557 NANTPGGGATPGMAAAASSSPSYRFPFAALQDATGNFDEGLVIGEGGFGKVYAAVLQDGT 616
Query: 459 KVIFSYLSKDGEEG 500
KV + + +G
Sbjct: 617 KVAVKRANPESRQG 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,757,815
Number of Sequences: 37544
Number of extensions: 486367
Number of successful extensions: 1067
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -