Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00177
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0) 97 1e-20
SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7) 32 0.59
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 31 1.4
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 5.5
SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_19274| Best HMM Match : SET (HMM E-Value=2.7e-06) 28 7.2
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 28 9.5
SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013) 28 9.5
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 28 9.5
>SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)
Length = 326
Score = 97.5 bits (232), Expect = 1e-20
Identities = 42/75 (56%), Positives = 53/75 (70%)
Frame = +3
Query: 285 NTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTKV 464
N PY G+T+GR ANRI A+F++DG TY LA N G + LHGG+ GFNK W S+++ V
Sbjct: 106 NPPYFGSTIGRVANRIANAEFTLDGKTYHLAKNNGPNCLHGGLIGFNKVLWQSSIEEDHV 165
Query: 465 IFSYLSKDGEEGYPG 509
SY S DGEEG+PG
Sbjct: 166 KMSYTSHDGEEGFPG 180
>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
Length = 332
Score = 31.9 bits (69), Expect = 0.59
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 178 RTLRSHQMPSM*IL-KPSLHDAVQNPQHSKSPCLLFKTNDSSGHK 47
RTL Q+P I KP ++ + + PQHS SP L N HK
Sbjct: 189 RTLSKFQVPLKAIADKPKMYYSKKAPQHSLSPLALSNDNPKKHHK 233
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 337 EQNSASTARLINSLTTLGKIIYMAGLTDLIRRIGIPP 447
+Q S+ T +LI+S + GK+ AG D+ R G PP
Sbjct: 1522 QQQSSDTRQLIDSDSDKGKLHPFAGDADISRTFGAPP 1558
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 285 NTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGT 458
N+ YL + G + G + S Q +N+ ++ IN N ++WNS++DG+
Sbjct: 758 NSTYLTESAGNTTSYSNGYQSSAYPLINQ-TDNMNNTEMNNMINPDNSSSWNSSIDGS 814
>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 349
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 94 KSPCLLFKTNDSSGHKQLRKQSYVMYAF 11
K CL+ + NDS GH + R ++ V+ +F
Sbjct: 208 KQACLVRRANDSQGHLEYRTETSVVSSF 235
>SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1007
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 617 YFNLAGHETGVQEIYNHIFVINADKI--TETDSGSIPTGGFISVGGTPY 757
Y+++ GH+ G IY I + N D+I + G IS+ G Y
Sbjct: 585 YYHMYGHQIGTLNIYKRIGLKNLDRIWTLSGEQGQDWNEALISINGNCY 633
>SB_19274| Best HMM Match : SET (HMM E-Value=2.7e-06)
Length = 309
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 458 STVNGGIPIRLIKSVNPAM*MIFPNVVSELISRAVDAEF--CSADPVGTAADRGP 300
S+++G +P++ +S P +FP+ V S A+F C+A P+ GP
Sbjct: 56 SSIDGTVPVKSPRSSPPLAAFVFPDEVRLCKSSIPGAKFGVCAAHPIPPGTWIGP 110
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 123 MMLSKILNIQSHHVYYSKRMIQAAINN*ENNPM*CTRSSRD 1
M+L ++N +SH+ + + M + + EN+P T S++D
Sbjct: 47 MLLQDVINNRSHYPAFDQLMSELQVQRDENSPGIWTSSNQD 87
>SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 209 IDCMVAPYEMTDTEKPSDALHVNFETVSP*CCPKSS 102
I C YE+ K + H+++ SP CCP S
Sbjct: 331 IGCCCEEYEIFVNGKVHEQHHLSYNPCSPLCCPGGS 366
>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 459
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Frame = +3
Query: 207 NSGTGQIRNHQ*RCSGFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNI 386
NS TG N R G +N T ++ G +N IGG +I GT
Sbjct: 169 NSTTGGTNNKTGRTKN---TTGGLNGTTEGKNSSTGGTSNTIGGTSNTIGGTKSTTGGTR 225
Query: 387 GKDHLHGG---INGFNKANWNST 446
G + HG NG + N+T
Sbjct: 226 GINEKHGATQETNGTTQKTNNTT 248
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 123 MMLSKILNIQSHHVYYSKRMIQAAINN*ENNPM*CTRSSRD 1
M+L ++N +SH+ + + M + + EN+P T S++D
Sbjct: 815 MLLQDVINNRSHYPAFDQLMSELQVQRDENSPGIWTSSNQD 855
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,098,046
Number of Sequences: 59808
Number of extensions: 566765
Number of successful extensions: 2726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2725
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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