Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00177
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    60   2e-09
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    60   2e-09

>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +3

Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKA 431
           GFD +D +  ++   +G TVGR ANRI  +    DG  Y +  N G  +LHGG NG    
Sbjct: 43  GFDTIDEF-EKDAASIGKTVGRVANRIKNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYR 101

Query: 432 NWNSTVDGTK-VIFSYLSKDGEEGYPG 509
            W       + V FS  + + ++G PG
Sbjct: 102 KWEVVRHAPESVSFSVRANEQDDGLPG 128



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 27/90 (30%), Positives = 41/90 (45%)
 Frame = +2

Query: 500 IPGDLITNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVI 679
           +PGD   ++TY V + N L ++  +            H+Y+NL G +T    +  H   +
Sbjct: 126 LPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEM 181

Query: 680 NADKITETDSGSIPTGGFISVGGTPYDLAS 769
            AD+  E D    PTG   SV  T +D  S
Sbjct: 182 EADEFVEVDDTFCPTGAIRSVTDTGFDFRS 211



 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 163 GFSVSVISYGATIQSIQVPDKYGITSDVVLG 255
           G + +++ +GAT+  +  PDK G   D+VLG
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLG 43


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +3

Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKA 431
           GFD +D +  ++   +G TVGR ANRI  +    DG  Y +  N G  +LHGG NG    
Sbjct: 43  GFDTIDEF-EKDAASIGKTVGRVANRIKNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYR 101

Query: 432 NWNSTVDGTK-VIFSYLSKDGEEGYPG 509
            W       + V FS  + + ++G PG
Sbjct: 102 KWEVVRHAPESVSFSVRANEQDDGLPG 128



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 27/90 (30%), Positives = 41/90 (45%)
 Frame = +2

Query: 500 IPGDLITNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVI 679
           +PGD   ++TY V + N L ++  +            H+Y+NL G +T    +  H   +
Sbjct: 126 LPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEM 181

Query: 680 NADKITETDSGSIPTGGFISVGGTPYDLAS 769
            AD+  E D    PTG   SV  T +D  S
Sbjct: 182 EADEFVEVDDTFCPTGAIRSVTDTGFDFRS 211



 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 163 GFSVSVISYGATIQSIQVPDKYGITSDVVLG 255
           G + +++ +GAT+  +  PDK G   D+VLG
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLG 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,307,587
Number of Sequences: 27780
Number of extensions: 413722
Number of successful extensions: 1050
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)