Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00177
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.048
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.048
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.77 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.1 bits (62), Expect = 0.048
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 402  HGGINGFNKANWNSTVDGTKVIFSYLSKDGEEG 500
            HG I GFN     ++       FS +S DGEEG
Sbjct: 1036 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1068


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.048
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 402  HGGINGFNKANWNSTVDGTKVIFSYLSKDGEEG 500
            HG I GFN     ++       FS +S DGEEG
Sbjct: 1032 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1064


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 192 GYHTVNSG-TGQIRNHQ*RCSGFDELDGYVN 281
           G  +V+SG    +RN++   S  DEL G++N
Sbjct: 36  GQRSVSSGFRSSLRNYKTLISSHDELPGHIN 66


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 371 TR*QHWERSFTW 406
           T+ QHW R  TW
Sbjct: 18  TQAQHWSRGNTW 29


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 371 TR*QHWERSFTW 406
           T+ QHW R  TW
Sbjct: 18  TQAQHWSRGNTW 29


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 546 TMPCMSTLCRRQLKRP 593
           T+PC   LC +   RP
Sbjct: 40  TLPCKCHLCGKAFSRP 55


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 295  YGVFLFTYPSSSSNPEQR 242
            Y  FL+    SS NP+Q+
Sbjct: 959  YSSFLYKSSESSCNPDQK 976


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 117 LSKILNIQSHHVYYSKRMIQAAINN*ENN 31
           L  IL++  +H     +  Q +INN  NN
Sbjct: 112 LKVILDLVPNHTSDQHKWFQMSINNTNNN 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,303
Number of Sequences: 438
Number of extensions: 5448
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)