Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00176
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 121 6e-28
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 79 3e-15
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 68 8e-12
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3) 31 1.4
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 9.9
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2) 28 9.9
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 9.9
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 9.9
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 121 bits (292), Expect = 6e-28
Identities = 54/90 (60%), Positives = 71/90 (78%)
Frame = +1
Query: 514 VHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXXX 693
V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGRGTKIVL++KED E++
Sbjct: 86 VTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGRGTKIVLYLKEDQTEYLEEKRIKEIVKK 145
Query: 694 XSQFIGYPIKLMVEKEREKELSDMKPKKKE 783
SQFIGYP+ L+V+KER+KE+SD + +++E
Sbjct: 146 HSQFIGYPLSLLVQKERDKEVSDDEEEEEE 175
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = +2
Query: 434 QAGADISMIGQFGVGFYSSYLVADR*LFT 520
+AGADISMIGQFGVGFYS+YLVA++ + T
Sbjct: 59 KAGADISMIGQFGVGFYSAYLVAEKVVVT 87
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 79.4 bits (187), Expect = 3e-15
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 LTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQ 436
LT ++ L I I ++ GT TI D G+GMT+ +L+++LG IAKSG+K FME L+
Sbjct: 106 LTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFMEKLK 165
Query: 437 AGADIS---MIGQFGVGFYSSYLVADR 508
A S +IGQFGVGFYS+++VAD+
Sbjct: 166 NEARSSHENIIGQFGVGFYSTFMVADK 192
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = +1
Query: 532 DDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXXXXSQFIG 711
+ + Y W S GS+ +G + RGTK+VLH+KED F S F+G
Sbjct: 203 NSQGYFWTSDGSGSYEYAEANG--VARGTKLVLHLKEDCKRFAMKTAVEDIVQRYSNFVG 260
Query: 712 YPIKL 726
+PI L
Sbjct: 261 FPIYL 265
Score = 35.9 bits (79), Expect = 0.037
Identities = 16/61 (26%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 72 AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 248
+V+ + E + + E + ++ + + L++++ + ++F+RE+ISN+SDAL+K+R
Sbjct: 43 SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102
Query: 249 Y 251
+
Sbjct: 103 H 103
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 68.1 bits (159), Expect = 8e-12
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Frame = +1
Query: 514 VHSKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXX 690
V SK+NDD+QY+WES A SF++ D G L RGT I LH+KE+ +++
Sbjct: 181 VTSKNNDDKQYIWESDA-SSFSISEDPRGPTLKRGTTISLHLKEEARDYLEPETIKDLVK 239
Query: 691 XXSQFIGYPIKLMVEK--EREKELSDMKPKKKE 783
SQFI +PI L K E E+ + D +KKE
Sbjct: 240 KYSQFINFPIFLWTSKTTEVEEPIDDAPEEKKE 272
Score = 67.7 bits (158), Expect = 1e-11
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = +3
Query: 93 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 248
+M+ + E FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR
Sbjct: 68 QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIR 119
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/55 (60%), Positives = 39/55 (70%)
Frame = +2
Query: 254 TLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 418
+LTD + DSG EL IKI +K L + DTGIGMTK +L+ NLGTIAKSGT A
Sbjct: 122 SLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGTIA 176
>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
Length = 375
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 39 PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 218
PS V KA K +E ET+P E+ +F+ + ++ S+ +FLR I
Sbjct: 71 PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123
Query: 219 NSSDALDKI-RYELSRIRQ 272
SDA +KI R E+++ Q
Sbjct: 124 LRSDASEKIVRSEIAKAIQ 142
>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +2
Query: 269 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 439
+K+ G+E+ + ++NE ++ +G ++ D++ N+G T++ +E +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 657 HGRTQNQRDRKETFPVHWLPNQADG*KRTRKRTV*YEAEEERRK 788
H R+++ RDR+ P H +A +R RKR Y++ RR+
Sbjct: 848 HRRSESPRDRRRRSPEHRRRREASPPRRDRKR---YDSPPRRRR 888
>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 289
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 134 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 12
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 134 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 12
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 547 VWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAE 654
VW SSA G+ ++ + E L T + K+++AE
Sbjct: 528 VWSSSASGANMIQGEPAEHLAEATAAPITKKDEIAE 563
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 134 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 12
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 479 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 517
>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
Length = 306
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 134 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 12
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 412
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 134 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 12
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 246
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 134 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 12
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,383,784
Number of Sequences: 59808
Number of extensions: 548106
Number of successful extensions: 1614
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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