Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00175
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   1e-30
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.21 
SB_40543| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)             29   2.6  
SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.5  
SB_42531| Best HMM Match : DoxX (HMM E-Value=2)                        28   6.1  
SB_53180| Best HMM Match : DUF1507 (HMM E-Value=4.4)                   28   8.0  
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       28   8.0  
SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    28   8.0  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score =  130 bits (313), Expect = 1e-30
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +1

Query: 256 NWPETDVRAIVVTDGERILGLGDFGACGMGIPVGKLALYTALGGIKPHQCLPITIDVGTI 435
           NWP T+V+AIV+TDGERILGLGD G CGMGIPVGKLALYT  GGI P  CLP+ IDVGT 
Sbjct: 186 NWPTTEVKAIVMTDGERILGLGDLGCCGMGIPVGKLALYTVCGGIDPEGCLPVMIDVGTN 245

Query: 436 TQSMLDDPLYIGLRQRR 486
            + +LDDP YIG+RQ+R
Sbjct: 246 NEELLDDPFYIGVRQKR 262



 Score =  112 bits (269), Expect = 3e-25
 Identities = 47/71 (66%), Positives = 60/71 (84%)
 Frame = +2

Query: 41  NPLNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFIT 220
           N L KYI LM LL+RNE LF+R + D   E+MPIVYTPTVGLAC+K+G+++RRPRGLFI+
Sbjct: 114 NDLEKYIQLMALLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFIS 173

Query: 221 IHDKGHVYDVL 253
           IHDKGH+ D++
Sbjct: 174 IHDKGHIRDIV 184



 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = +2

Query: 509 LLDEFMRAVVRRYGQNCLVQFEDFGNANAFRLLEKYMNKYCTFNDDIQGTAAVAVAGL 682
           L+DEF++A ++R+G   L+QFEDFGN NAFR LEKY NK CTFNDDIQGTAAVAVAG+
Sbjct: 271 LIDEFIQAALQRFGPTTLIQFEDFGNHNAFRFLEKYRNKICTFNDDIQGTAAVAVAGV 328


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +2

Query: 293  PTENVFWAWAISARAGWASLWANSRSTPRSEASSLISVYPSLSTWVRSPSRCWTTRCTSG 472
            P +N F   +  A    +++W    S P SE+  + S Y    T  +SP+  +T+   + 
Sbjct: 2251 PEQNAFGGDSSWASPDMSAIWGEQYSIPSSESLPVSSAYQPSGT--QSPTSTFTS--LAD 2306

Query: 473  SGSGACWPR 499
             GSG  WP+
Sbjct: 2307 LGSGMIWPQ 2315


>SB_40543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 470 GSGSGACWPRLRRLLDEFMRAVVRRYGQNCLVQFEDFGNANAFRLLEKYMNKYCTFNDDI 649
           GSG  A     + +L   ++A VRR G +C    ED  N+   R+L+K +     F+ + 
Sbjct: 55  GSGVKASPKEQQIILSSDLKAEVRRSGNDCAANTED-KNSEVIRVLQKILENQMPFSSEE 113

Query: 650 QGTAAVAV 673
                V +
Sbjct: 114 YSIGGVKI 121


>SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)
          Length = 1076

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 270  GRPRHCCNRRRTYFGPGRFRRVRDGHP-CGQT-RALHRARRHQ 392
            G P+  C RR+ + GPGR + +   +P   QT R L RA R +
Sbjct: 1004 GCPQELCERRQRHEGPGRLKTLELHYPRIRQTFRLLTRAERQR 1046


>SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 306 YFGPGRFRRVRDGHPCGQTRALHRARRHQASS 401
           + GP R R  R+  PCG  R   RA+R  + S
Sbjct: 338 FVGPQRARMARNSLPCGPIRLSVRAKRQSSQS 369


>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 789

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 387 ASERGVEREFAHRDAHPARAEIAQAQNTFSVGYNNGADVRLRPVLRTSYTCP 232
           + E G   + + +D +   ++  QAQNT + GY N AD  L+      YT P
Sbjct: 360 SEESGYAIKVSVQDDNSTDSQTPQAQNTQTQGYQNAADQSLQQ--SAGYTYP 409


>SB_42531| Best HMM Match : DoxX (HMM E-Value=2)
          Length = 210

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 11  LCKLSIDTYENPLNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGL 166
           +C +   TY +    + +  GL+  +EH  YRF+   +  +M  +     GL
Sbjct: 122 ICLIIAFTYTHEDKVFYFTGGLIKGDEHSHYRFILVCIGALMAFIGATVSGL 173


>SB_53180| Best HMM Match : DUF1507 (HMM E-Value=4.4)
          Length = 201

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 676 GHRHGRRPLDVVVESAVLVHILLEEPKSVSVPEVLEL-HETVLP 548
           GH+  ++ LDV +  A+  HIL+ E     + + ++  ++T+LP
Sbjct: 156 GHQEEKQELDVEMRKAIAEHILVIEANGERLRKAIQSPYQTLLP 199


>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 270 GRPRHCCNRRRTYFGPGRFRRVRDGHPCGQTRALHRARRHQASSVSTHHYRRG 428
           GR + C +R++ +   G F  V  GH   Q+           +  +T  YRRG
Sbjct: 382 GRAKTCVHRKQNF--AGEFDSVETGHHHAQSETEQLLSEKPITMTNTKGYRRG 432


>SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1289

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 676  GHRHGRRPLDVVVESAVLVHILLEEPKSVSVPEVLEL-HETVLP 548
            GH+  ++ LDV +  A+  HIL+ E     + + ++  ++T+LP
Sbjct: 1244 GHQEEKQELDVEMRKAIAEHILVIEANGERLRKAIQSPYQTLLP 1287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,568,583
Number of Sequences: 59808
Number of extensions: 490183
Number of successful extensions: 1408
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)