Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00175
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...   156   2e-38
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U40948-3|AAA81729.1|  307|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   5.4  
U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    28   5.4  
Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    28   7.1  
AC024780-5|AAF60570.2|  211|Caenorhabditis elegans Hypothetical ...    28   7.1  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score =  156 bits (378), Expect = 2e-38
 Identities = 92/221 (41%), Positives = 123/221 (55%), Gaps = 9/221 (4%)
 Frame = +2

Query: 47  LNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIH 226
           L KYI L  L DRNE L+YR + DNV E+MPIVYTPTVG ACQ FG +YR P+GL+ITI+
Sbjct: 105 LAKYIQLDSLQDRNEKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITIN 164

Query: 227 DK--GHVYDVLRT-GRRRTSAPLL*PTENV-----FWAWAISARAGWASLW-ANSRSTPR 379
           D     ++ +L         A ++   E +        + I    G  +L+ A +   P 
Sbjct: 165 DNSISKIHQILANWPTENVRAIVITDGERILGLGDLGTYGIGIPVGKLALYVALAGIRPE 224

Query: 380 SEASSLISVYPSLSTWVRSPSRCWTTRCTSGSGSGACWPRLRRLLDEFMRAVVRRYGQNC 559
                ++ V    S  +  P      R           P    L+D FM+A  +R+G++ 
Sbjct: 225 WCLPVILDVGTDNSELLNDPFYTGLRR------KRVRGPEYDTLVDNFMKAATKRFGRDT 278

Query: 560 LVQFEDFGNANAFRLLEKYMNKYCTFNDDIQGTAAVAVAGL 682
           L+QFEDFGN NA+RLL++Y  +YC FNDDIQGTAAV VAGL
Sbjct: 279 LIQFEDFGNQNAYRLLDRYKGEYCMFNDDIQGTAAVVVAGL 319



 Score =  119 bits (286), Expect = 2e-27
 Identities = 52/78 (66%), Positives = 62/78 (79%)
 Frame = +1

Query: 256 NWPETDVRAIVVTDGERILGLGDFGACGMGIPVGKLALYTALGGIKPHQCLPITIDVGTI 435
           NWP  +VRAIV+TDGERILGLGD G  G+GIPVGKLALY AL GI+P  CLP+ +DVGT 
Sbjct: 177 NWPTENVRAIVITDGERILGLGDLGTYGIGIPVGKLALYVALAGIRPEWCLPVILDVGTD 236

Query: 436 TQSMLDDPLYIGLRQRRV 489
              +L+DP Y GLR++RV
Sbjct: 237 NSELLNDPFYTGLRRKRV 254


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 45  HLTSTSILWGSWTAMSICSTVS 110
           H TS ++LW SW+A+ I +T+S
Sbjct: 200 HETSPAVLWKSWSAILILTTLS 221


>U40948-3|AAA81729.1|  307|Caenorhabditis elegans Hypothetical
           protein F55D10.4 protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 15  ASSRSIHTKIHLTSTSILWGSWTAMSICSTVS 110
           AS R +HT IHL STS+    W   SI + V+
Sbjct: 28  ASDRRLHTNIHLLSTSL----WVCNSITAIVT 55


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 57  TSILWGSWTAMSICSTVS 110
           TS +WG W A S C TV+
Sbjct: 52  TSAIWGDWGAWSTCPTVT 69


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 57  TSILWGSWTAMSICSTVS 110
           TS +WG W A S C TV+
Sbjct: 52  TSAIWGDWGAWSTCPTVT 69


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 57  TSILWGSWTAMSICSTVS 110
           TS +WG W A S C TV+
Sbjct: 52  TSAIWGDWGAWSTCPTVT 69


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 57  TSILWGSWTAMSICSTVS 110
           TS +WG W A S C TV+
Sbjct: 52  TSAIWGDWGAWSTCPTVT 69


>U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical
           protein T26C11.4 protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = +3

Query: 159 LAWPVRSSGLCTADQGASSSRSTIRDMYTMFLELAGDGRPRHCCNRRRTYFGPGRFRRVR 338
           L+  +RSSG    DQG  S R   RD Y   L         +  N+     G  R R   
Sbjct: 231 LSRSMRSSGSQRQDQGFQSERDEARDRYIEHLSSNESTWMENSRNQSFNQNGGFRTRHEE 290

Query: 339 D--GHPCGQTRALHRARRHQASSVSTHHYRRGYD 434
           D  G   G +    +ARR Q S     ++RR  D
Sbjct: 291 DRSGSNHGHSNRDSKARRGQDSG---FNHRRNVD 321


>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 33  HTKIHLTSTSILWGSWTAMSIC 98
           HT +   ST+ILW S +A+SIC
Sbjct: 192 HTLLRSWSTTILWTSISAISIC 213


>Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical
           protein F17B5.3 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 252 RTSYTCPLSWIVMKRPLGR 196
           R + TCP  WI  +RP GR
Sbjct: 66  RPTRTCPRDWITFERPQGR 84


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 387  HQASSVSTHHYRRGYDHP 440
            HQ+SS + HHY   Y +P
Sbjct: 1318 HQSSSSNNHHYSHNYSYP 1335


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 110 VADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKGHVYDV-LRTGR 265
           + D V  + P++Y P V     +  L      GLF    + GHV  V L TGR
Sbjct: 436 IVDPVRIVPPVIYLPFVSEKRSQIDLTATGGSGLFEWTSEDGHVATVDLLTGR 488


>AC024780-5|AAF60570.2|  211|Caenorhabditis elegans Hypothetical
           protein Y43B11AR.3 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
 Frame = +2

Query: 365 RSTPRSEASSLISVYPSLSTWVRSPSRCWTTRCTSGSGSGACWPRLRRLLDEF------M 526
           R  PR++      VY     W RSP    TT+C     SG     LR+L++         
Sbjct: 65  RGVPRAQLPGSQIVYSIDLNWFRSPKFSVTTQC-----SGEDDEMLRQLIEHIGSNLGTE 119

Query: 527 RAVVRRYGQNCLVQFEDFGNANAFRLLEKYMN 622
              +R   QN    F  FG+ NA  LLEK +N
Sbjct: 120 STTIRLQRQN----FGPFGSDNA--LLEKQIN 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,477,923
Number of Sequences: 27780
Number of extensions: 350772
Number of successful extensions: 1101
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)