Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00175
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 151 SVHNWHHFSHVIRDETVEQMLIA 83
           SVH+ HH   V RD   E +L+A
Sbjct: 21  SVHHCHHNGVVHRDLKPENLLLA 43


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 341 WASLWANSRSTPRSEASSLISV 406
           W S W N  +TP   A  + +V
Sbjct: 239 WVSFWLNRNATPARVALGVTTV 260


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 341 WASLWANSRSTPRSEASSLISV 406
           W S W N  +TP   A  + +V
Sbjct: 239 WVSFWLNRNATPARVALGVTTV 260


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 341 WASLWANSRSTPRSEASSLISV 406
           W S W N  +TP   A  + +V
Sbjct: 178 WVSFWLNRNATPARVALGVTTV 199


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 613 LLEEPKSVSVPEVLELHETVLPVAAHDG 530
           L E+P+    P++   +E  L   AH+G
Sbjct: 221 LCEKPEVCDYPDIYSGYEGALRCLAHNG 248


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 613 LLEEPKSVSVPEVLELHETVLPVAAHDG 530
           L E+P+    P++   +E  L   AH+G
Sbjct: 221 LCEKPEVCDYPDIYSGYEGALRCLAHNG 248


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 613 LLEEPKSVSVPEVLELHETVLPVAAHDG 530
           L E+P+    P++   +E  L   AH+G
Sbjct: 221 LCEKPEVCDYPDIYSGYEGALRCLAHNG 248


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 350 LWANSRSTPRSEASSL 397
           LW +SRST R  A+S+
Sbjct: 274 LWLDSRSTERMIAASV 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,049
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)