Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00174
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 75 5e-14
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 72 3e-13
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 31 0.57
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 29 3.1
06_03_0543 + 21967787-21970261 29 3.1
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 5.3
04_03_0663 - 18487295-18487795 27 7.1
12_02_1057 + 25733376-25735439 27 9.3
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558 27 9.3
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 27 9.3
03_02_0766 - 11003746-11003902,11004037-11004281,11004379-110045... 27 9.3
01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977 27 9.3
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 74.5 bits (175), Expect = 5e-14
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = +3
Query: 3 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 173
N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 168 NNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 71.7 bits (168), Expect = 3e-13
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = +3
Query: 3 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 161
N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 168 NNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 280 TRCSSCFWSTPCSRRMVCPGTR*VEHNCSSTSSRHRSA 393
T C C P + VCPG+R V+ N + R+ A
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKANYDACLLRYSDA 312
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 280 TRCSSCFWSTPCSRRMVCPGTR 345
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 280 TRCSSCFWSTPCSRRMVCPGTR*VEHNCSSTSSRH 384
T+C C P VCPG+R V N + R+
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNANYDACLLRY 127
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 30 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 119
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 131 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 15
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>04_03_0663 - 18487295-18487795
Length = 166
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 350 THLVPGQTILLEQGVLQKQELQRVQQVG 267
T + P QT + +Q QKQ QR+Q++G
Sbjct: 63 TQIKPNQTKIKQQEENQKQSSQRIQKLG 90
>12_02_1057 + 25733376-25735439
Length = 687
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 280 TRCSSCFWSTPCSRRMVCPGTR*VEHNCSSTSSRH 384
T+C C P VCPG+R + N + R+
Sbjct: 93 TQCQECLAGAPAGIVQVCPGSRTADANYDACLLRY 127
>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
Length = 852
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +1
Query: 376 SRHRSALVGW----IRSRLECYINTLHWLIILHE 465
++ RS ++GW + +L CY+ +LI+LH+
Sbjct: 265 NKFRSEMIGWNEEQLVEKLRCYLRGKIFLIVLHD 298
>04_04_1331 -
32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 105 VVDLFFYRDPEESEK 149
++D+F+YRDP E EK
Sbjct: 721 MLDVFYYRDPNEMEK 735
>03_02_0766 -
11003746-11003902,11004037-11004281,11004379-11004585,
11004699-11004861,11005105-11005370
Length = 345
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 150 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLH 52
PF F++G+G+ H SA A A T+H
Sbjct: 99 PFIFVRGNGKGRTSINHESASSHNAESAAFTVH 131
>01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977
Length = 445
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -3
Query: 138 LQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSNQ 25
L GHG T +P+AG +H+ + LH+PTT +S+Q
Sbjct: 363 LVGHG--TPSYINPAAG---SHNYSQFLHLPTTPSSHQ 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,441,722
Number of Sequences: 37544
Number of extensions: 195018
Number of successful extensions: 615
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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