Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00174
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)                82   3e-16
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   1.4  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               29   2.4  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)                    27   7.2  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   27   9.6  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 35/54 (64%), Positives = 44/54 (81%)
 Frame = +3

Query: 3   NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQA 164
           N K  HSIGLM+WLLAREVLR+RG + R   W+++ DL+FYRDPEE+EK+EQ A
Sbjct: 164 NNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQAA 217


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 18  HSIGLMWWLLAREVLRLRGVLP 83
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 120 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 1
           R  QP H ++ +  A HH A  LH P  +TS   +   W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 292  SCFWSTPCSRRMVCPGTR*VEHNCSSTSSRHRSA 393
            +C W+ P   R+  PG R   H    T+  H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)
          Length = 195

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 120 RTNQPQHPSAGHGEAHHEASTLHVPTTTTSNQ*SGKT 10
           R ++P  P   HG  H++ ST   P    SN+  G T
Sbjct: 155 RVHRPATPGREHGVQHNQISTSCEPEFAQSNETGGLT 191


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 115  KSTTTSQRWSRGSTPRSLNTSRANNHH 35
            K+TT   RWS+G TP      ++   H
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH 1422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,006,472
Number of Sequences: 59808
Number of extensions: 227802
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)