Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00174
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    64   6e-11
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   1.6  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC024817-39|AAP68916.1|  128|Caenorhabditis elegans Hypothetical...    28   4.8  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 5/59 (8%)
 Frame = +3

Query: 3   NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW-----DVVVDLFFYRDPEESEKDEQQA 164
           N K   SIGLMWW+LARE+L LRG + R   +     +++ DL+FYRDP E+EK+E  A
Sbjct: 164 NNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRDPTETEKEETGA 222


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 274 CCTRCSSCFWSTPCSRRMVCP 336
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 6   TKSSHSIGLMWWLLA 50
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


>AC024817-39|AAP68916.1|  128|Caenorhabditis elegans Hypothetical
           protein Y54G2A.36 protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +1

Query: 271 TCCTRCSSCFWSTPCSRRMVCPGTR*VEHNCSSTSSRHRSALVGWIRSRLEC 426
           TC   C+SC    PC     C G     H   S S R    ++ W  SR +C
Sbjct: 47  TC--NCNSCVDGWPCQEDSACGGFNRCLHQEQSHSDRSPHFILQW--SRRQC 94


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 232  HWSQWLHG*RYRPTCCTRCSSCFWSTPCSRRMVCP 336
            +WS+W  G    PT C  CS+      C     CP
Sbjct: 909  YWSEWTTGGSC-PTTCGSCSTVTQKRVCMSPSTCP 942


>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 242 WLQCFIPVFMDRSNYFWFSWYHS 174
           WL CF  +       F+ +W+HS
Sbjct: 302 WLNCFSEMMQFADRQFYLNWWHS 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,476,928
Number of Sequences: 27780
Number of extensions: 162473
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)