Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00174
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...    76   1e-14
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...    74   7e-14
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    50   1e-06
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    28   4.5  
At5g08090.1 68418.m00943 hypothetical protein                          27   5.9  
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    27   7.8  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 33/58 (56%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
 Frame = +3

Query: 3   NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESE-KDEQQAKEQ 173
           N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++ +DE +A  Q
Sbjct: 168 NNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 30/56 (53%), Positives = 43/56 (76%)
 Frame = +3

Query: 3   NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 170
           N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++++  +  E
Sbjct: 169 NNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = +3

Query: 3   NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 113
           N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 169 NNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 150 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 28
           P +FL G GRR NQ      G  + + +++  H+P     N
Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171


>At5g08090.1 68418.m00943 hypothetical protein 
          Length = 322

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 397 VGWIRSRLECYINTLHWLII 456
           +GW +S  E Y+ T+HWLI+
Sbjct: 20  LGWTKS--EIYVLTMHWLIV 37


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 148 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHG 255
           +++++PR+R W QLN K L LS     K   + L+G
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNG 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,026,949
Number of Sequences: 28952
Number of extensions: 152949
Number of successful extensions: 462
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)